Functional clusters

Information

  • Type MapMan
  • Description Multi-process regulation.Programmed Cell Death (PCD) system.vacuole-mediated cell death.metacaspase-like regulator (MCP2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_245 2 2 0.000547395
Arabidopsis lyrata scaffold_2 1 CH_aly_23 5 6 0.0000000000000179379
Arabidopsis thaliana Chr1 1 CH_ath_44 4 7 0.0000000000370329
Brassica carinata ChrB02 1 CH_bca_353 3 4 0.000000784066
Brassica napus A07 1 CH_bna_255 3 3 0.000000588516
Brassica napus C06 1 CH_bna_93 4 5 0.000000000463958
Brassica oleracea C6 1 CH_bol_44 4 5 0.000000000259272
Brassica rapa A07 1 CH_bra_45 4 4 0.0000000000498531
Cardamine hirsuta Chr2 1 CH_chi_31 5 5 0.00000000000000359581
Capsella rubella scaffold_2 1 CH_cru_27 5 5 0.00000000000000450207
Eutrema salsugineum scaffold_9 1 CH_esa_80 3 3 0.0000000869853
Gossypium hirsutum A06 1 CH_ghi_121 5 13 0.0000000000569821
Gossypium hirsutum D06 1 CH_ghi_6 12 31 8.17191e-33
Glycine max Gm08 1 CH_gma_582 2 3 0.000683172
Gossypium raimondii Chr10 1 CH_gra_6 8 21 7.34199e-22
Lupinus albus Lalb_Chr25 1 CH_lal_319 2 2 0.000314895
Manihot esculenta Chromosome15 1 CH_mes_449 2 3 0.00054954
Oryza sativa ssp. japonica chr05 1 CH_osa_327 2 2 0.000316874
Physcomitrium patens Chr01 1 CH_ppa_252 2 2 0.000367636
Phaseolus vulgaris Chr11 1 CH_pvu_425 2 2 0.000440836
Quercus lobata 4 1 CH_qlo_980 2 2 0.000516289
Quercus lobata 4 1 CH_qlo_981 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_610 2 2 0.000119596
Salvia bowleyana GWHASIU00000001 1 CH_sbo_239 3 17 0.0000210983
Simmondsia chinensis GWHAASQ00000014 1 CH_sci_307 2 2 0.000851426
Sequoiadendron giganteum chr1 1 CH_sgi_1378 2 2 0.000730727
Schrenkiella parvula ch5-7 1 CH_spa_109 3 3 0.00000052074
Theobroma cacao Chromosome_10 1 CH_tca_353 2 2 0.000219716
Tarenaya hassleriana NW_010965372.1 1 CH_tha_187 2 2 0.000419082
Aethionema arabicum LG-4 2 CH_aar_245 2 2 0.000547395
Arabidopsis lyrata scaffold_2 2 CH_aly_23 5 6 0.0000000000000179379
Arabidopsis thaliana Chr1 2 CH_ath_44 4 7 0.0000000000370329
Brassica carinata ChrB02 2 CH_bca_353 3 4 0.000000784066
Brassica oleracea C6 2 CH_bol_44 4 5 0.000000000259272
Brassica rapa A07 2 CH_bra_45 4 4 0.0000000000498531
Cardamine hirsuta Chr2 2 CH_chi_31 5 5 0.00000000000000359581
Capsella rubella scaffold_2 2 CH_cru_27 5 5 0.00000000000000450207
Eutrema salsugineum scaffold_9 2 CH_esa_80 3 3 0.0000000869853
Gossypium hirsutum A06 2 CH_ghi_121 5 13 0.0000000000569821
Gossypium hirsutum D06 2 CH_ghi_6 12 31 8.17191e-33
Glycine max Gm08 2 CH_gma_582 2 3 0.000683172
Gossypium raimondii Chr10 2 CH_gra_6 8 21 7.34199e-22
Lupinus albus Lalb_Chr25 2 CH_lal_319 2 2 0.000314895
Lotus japonicus chr1 2 CH_lja_330 2 2 0.000214523
Manihot esculenta Chromosome15 2 CH_mes_449 2 3 0.00054954
Oryza sativa ssp. japonica chr05 2 CH_osa_327 2 2 0.000316874
Physcomitrium patens Chr01 2 CH_ppa_252 2 2 0.000367636
Phaseolus vulgaris Chr11 2 CH_pvu_425 2 2 0.000440836
Quercus lobata 4 2 CH_qlo_980 2 2 0.000516289
Quercus lobata 4 2 CH_qlo_981 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_610 2 2 0.000119596
Salvia bowleyana GWHASIU00000001 2 CH_sbo_239 3 17 0.0000210983
Simmondsia chinensis GWHAASQ00000014 2 CH_sci_307 2 2 0.000851426
Sequoiadendron giganteum chr1 2 CH_sgi_1378 2 2 0.000730727
Schrenkiella parvula ch5-7 2 CH_spa_109 3 3 0.00000052074
Theobroma cacao Chromosome_10 2 CH_tca_353 2 2 0.000219716
Tarenaya hassleriana NW_010965372.1 2 CH_tha_187 2 2 0.000419082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001