Functional clusters

Information

  • Type MapMan
  • Description Multi-process regulation.Programmed Cell Death (PCD) system.vacuole-mediated cell death.metacaspase-like regulator (MCP1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_19743_HRSCAF_19834 1 CH_ama_25 3 3 0.000000223035
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_280 3 4 0.000000887261
Camellia sinensis var. sinensis Chr3 1 CH_camsi_331 3 5 0.000000630717
Camellia sinensis var. sinensis Chr13 1 CH_camsi_884 2 2 0.000687821
Cannabis sativa NC_044377.1 1 CH_cansat_344 2 2 0.000393985
Capsicum annuum PGAv.1.6.scaffold523 1 CH_can_42 5 6 0.000000000000117378
Cicer arietinum L. Ca_LG1_v3 1 CH_car_278 2 2 0.000466981
Coffea canephora chr2 1 CH_ccan_19 4 7 0.000000000000121666
Citrus clementina scaffold_8 1 CH_ccl_62 4 4 0.0000000000248428
Carya illinoinensis Chr05 1 CH_cil_563 2 2 0.000929742
Corchorus olitorius AWUE01023871.1 1 CH_col_89 2 2 0.000292099
Carica papaya supercontig_42 1 CH_cpa_396 2 2 0.000950661
Cucumis sativus L. chr3 1 CH_csa_302 2 2 0.000500856
Durio zibethinus NW_019167849.1 1 CH_dzi_74 4 13 0.0000000268839
Erythranthe guttata scaffold_2 1 CH_egut_171 3 3 0.000000159065
Hydrangea macrophylla Hma1.2p1_0522F.1 1 CH_hma_281 2 2 0.000111086
Lupinus albus Lalb_Chr15 1 CH_lal_418 2 2 0.000787236
Lonicera japonica GWHAAZE00000005 1 CH_lonja_104 4 5 0.0000000000483275
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_231 3 4 0.00000133143
Malus domestica Chr10 1 CH_mdo_261 3 4 0.00000103527
Malus domestica Chr05 1 CH_mdo_314 3 6 0.00000517511
Manihot esculenta Chromosome07 1 CH_mes_45 6 9 3.36924e-16
Medicago truncatula chr2 1 CH_mtr_271 3 3 0.0000000506436
Nelumbo nucifera chr6 1 CH_nnu_413 2 2 0.000436015
Nelumbo nucifera chr1 1 CH_nnu_414 2 2 0.000436015
Oryza sativa ssp. japonica chr03 1 CH_osa_123 3 6 0.000000334659
Punica granatum NC_045128.1 1 CH_pgr_94 3 3 0.0000000337834
Prunus persica Pp02 1 CH_ppe_515 2 2 0.000745962
Pisum sativum chr1LG6 1 CH_psa_117 3 4 0.000000163255
Papaver somniferum NC_039364.1 1 CH_pso_439 2 2 0.0000675699
Populus trichocarpa Chr12 1 CH_ptr_254 3 6 0.00000561049
Populus trichocarpa Chr17 1 CH_ptr_96 4 4 0.0000000000405549
Phaseolus vulgaris Chr02 1 CH_pvu_472 2 2 0.000734727
Phaseolus vulgaris Chr06 1 CH_pvu_473 2 2 0.000734727
Quercus lobata 4 1 CH_qlo_431 4 26 0.000000215627
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_59 8 58 1.23723e-16
Rhododendron simsii chr05 1 CH_rsi_92 4 4 0.0000000000564366
Salvia bowleyana GWHASIU00000003 1 CH_sbo_298 3 18 0.0000506202
Salix brachista GWHAAZH00000012 1 CH_sbr_208 3 6 0.0000541513
Solanum lycopersicum SL4.0ch01 1 CH_sly_159 3 3 0.000000103353
Solanum pennellii Spenn-ch01 1 CH_spe_140 3 3 0.0000000593529
Solanum tuberosum ST4.03ch01 1 CH_stu_571 2 2 0.000512453
Trochodendron aralioides group4 1 CH_tar_117 3 3 0.0000000540676
Theobroma cacao Chromosome_2 1 CH_tca_188 3 4 0.000000643614
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_398 2 3 0.000681233
Tripterygium wilfordii NC_052249.1 1 CH_twi_317 2 2 0.00083626
Vigna mungo CM024069.1 1 CH_vmu_403 2 2 0.000646141
Vigna mungo CM024075.1 1 CH_vmu_404 2 2 0.000646141
Vitis vinifera chr16 1 CH_vvi_393 2 2 0.000456378
Zea mays 1 1 CH_zma_88 3 4 0.000000548984
Avicennia marina ScioBoG_19743_HRSCAF_19834 2 CH_ama_25 3 3 0.000000223035
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_280 3 4 0.000000887261
Camellia sinensis var. sinensis Chr3 2 CH_camsi_331 3 5 0.000000630717
Camellia sinensis var. sinensis Chr13 2 CH_camsi_884 2 2 0.000687821
Cannabis sativa NC_044377.1 2 CH_cansat_344 2 2 0.000393985
Capsicum annuum PGAv.1.6.scaffold523 2 CH_can_42 5 6 0.000000000000117378
Cicer arietinum L. Ca_LG1_v3 2 CH_car_278 2 2 0.000466981
Coffea canephora chr2 2 CH_ccan_19 4 7 0.000000000000121666
Citrus clementina scaffold_8 2 CH_ccl_62 4 4 0.0000000000248428
Carya illinoinensis Chr05 2 CH_cil_563 2 2 0.000929742
Corchorus olitorius AWUE01023871.1 2 CH_col_89 2 2 0.000292099
Carica papaya supercontig_42 2 CH_cpa_396 2 2 0.000950661
Cucumis sativus L. chr3 2 CH_csa_302 2 2 0.000500856
Durio zibethinus NW_019167849.1 2 CH_dzi_74 4 13 0.0000000268839
Eucalyptus grandis Chr09 2 CH_egr_908 2 2 0.000585274
Erythranthe guttata scaffold_2 2 CH_egut_171 3 3 0.000000159065
Hydrangea macrophylla Hma1.2p1_0522F.1 2 CH_hma_281 2 2 0.000111086
Lupinus albus Lalb_Chr15 2 CH_lal_418 2 2 0.000787236
Lonicera japonica GWHAAZE00000005 2 CH_lonja_104 4 5 0.0000000000483275
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_231 3 4 0.00000133143
Malus domestica Chr10 2 CH_mdo_261 3 4 0.00000103527
Malus domestica Chr05 2 CH_mdo_314 3 6 0.00000517511
Manihot esculenta Chromosome07 2 CH_mes_45 6 9 3.36924e-16
Nelumbo nucifera chr6 2 CH_nnu_413 2 2 0.000436015
Nelumbo nucifera chr1 2 CH_nnu_414 2 2 0.000436015
Oryza sativa ssp. japonica chr03 2 CH_osa_123 3 6 0.000000334659
Punica granatum NC_045128.1 2 CH_pgr_94 3 3 0.0000000337834
Prunus persica Pp02 2 CH_ppe_515 2 2 0.000745962
Pisum sativum chr1LG6 2 CH_psa_117 3 4 0.000000163255
Papaver somniferum NC_039364.1 2 CH_pso_439 2 2 0.0000675699
Populus trichocarpa Chr12 2 CH_ptr_254 3 6 0.00000561049
Populus trichocarpa Chr17 2 CH_ptr_96 4 4 0.0000000000405549
Phaseolus vulgaris Chr02 2 CH_pvu_472 2 2 0.000734727
Phaseolus vulgaris Chr06 2 CH_pvu_473 2 2 0.000734727
Quercus lobata 4 2 CH_qlo_431 4 26 0.000000215627
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_59 8 58 1.23723e-16
Rhododendron simsii chr05 2 CH_rsi_92 4 4 0.0000000000564366
Salvia bowleyana GWHASIU00000003 2 CH_sbo_298 3 18 0.0000506202
Salix brachista GWHAAZH00000012 2 CH_sbr_208 3 6 0.0000541513
Solanum lycopersicum SL4.0ch01 2 CH_sly_159 3 3 0.000000103353
Solanum pennellii Spenn-ch01 2 CH_spe_140 3 3 0.0000000593529
Solanum tuberosum ST4.03ch01 2 CH_stu_571 2 2 0.000512453
Trochodendron aralioides group4 2 CH_tar_117 3 3 0.0000000540676
Theobroma cacao Chromosome_2 2 CH_tca_188 3 4 0.000000643614
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_398 2 3 0.000681233
Tripterygium wilfordii NC_052249.1 2 CH_twi_317 2 2 0.00083626
Vigna mungo CM024069.1 2 CH_vmu_403 2 2 0.000646141
Vigna mungo CM024075.1 2 CH_vmu_404 2 2 0.000646141
Vitis vinifera chr16 2 CH_vvi_393 2 2 0.000456378
Zea mays 1 2 CH_zma_88 3 4 0.000000548984

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001