Functional clusters

Information

  • Type MapMan
  • Description Multi-process regulation.UPR (Unfolded Protein Response) signalling.IRE1-bZIP60 pathway.regulatory mediator (SVB)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr2 1 CH_camsi_408 3 5 0.00000378378
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_487 2 2 0.000673083
Gossypium raimondii Chr12 1 CH_gra_179 3 3 0.00000123302
Lonicera japonica GWHAAZE00000141 1 CH_lonja_117 4 4 0.000000000318986
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_203 3 3 0.000000332904
Magnolia biondii Chr10 1 CH_mbi_207 3 4 0.000000792439
Nelumbo nucifera chr4 1 CH_nnu_141 3 5 0.0000034211
Nicotiana tabacum Nitab4.5_0000673 1 CH_nta_112 2 2 0.000109727
Oryza sativa ssp. japonica chr07 1 CH_osa_10 8 20 1.10283e-18
Oryza sativa ssp. japonica chr11 1 CH_osa_170 3 4 0.0000113765
Quercus lobata 3 1 CH_qlo_349 4 12 0.0000000142942
Salvia bowleyana GWHASIU00000004 1 CH_sbo_91 4 6 0.000000000889863
Solanum lycopersicum SL4.0ch01 1 CH_sly_148 3 3 0.0000000516764
Solanum pennellii Spenn-ch01 1 CH_spe_173 3 3 0.000000489661
Solanum pennellii Spenn-ch02 1 CH_spe_174 3 3 0.000000489661
Solanum tuberosum ST4.03ch02 1 CH_stu_59 5 5 0.000000000000103564
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_111 3 3 0.000000300841
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_379 2 2 0.000557543
Vanilla planifolia JADCNL010000073.1 1 CH_vpl_1 13 14 4.8393e-39
Zea mays 2 1 CH_zma_19 5 5 0.000000000000223953
Camellia sinensis var. sinensis Chr2 2 CH_camsi_408 3 5 0.00000378378
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_487 2 2 0.000673083
Gossypium raimondii Chr12 2 CH_gra_179 3 3 0.00000123302
Lonicera japonica GWHAAZE00000141 2 CH_lonja_117 4 4 0.000000000318986
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_203 3 3 0.000000332904
Magnolia biondii Chr10 2 CH_mbi_207 3 4 0.000000792439
Nelumbo nucifera chr4 2 CH_nnu_141 3 5 0.0000034211
Nicotiana tabacum Nitab4.5_0000673 2 CH_nta_112 2 2 0.000109727
Oryza sativa ssp. japonica chr07 2 CH_osa_10 8 20 1.10283e-18
Oryza sativa ssp. japonica chr11 2 CH_osa_170 3 4 0.0000113765
Quercus lobata 3 2 CH_qlo_349 4 12 0.0000000142942
Salvia bowleyana GWHASIU00000004 2 CH_sbo_91 4 6 0.000000000889863
Solanum lycopersicum SL4.0ch01 2 CH_sly_148 3 3 0.0000000516764
Solanum pennellii Spenn-ch01 2 CH_spe_173 3 3 0.000000489661
Solanum pennellii Spenn-ch02 2 CH_spe_174 3 3 0.000000489661
Solanum tuberosum ST4.03ch02 2 CH_stu_59 5 5 0.000000000000103564
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_111 3 3 0.000000300841
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_379 2 2 0.000557543
Vanilla planifolia JADCNL010000073.1 2 CH_vpl_1 13 14 4.8393e-39
Zea mays 2 2 CH_zma_19 5 5 0.000000000000223953

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001