Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.endocytic trafficking.clathrin-independent machinery.adapter protein (Flotillin)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_373 2 2 0.000396027
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_137 4 6 0.0000000000422609
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_206 3 3 0.0000000470566
Arabidopsis thaliana Chr5 1 CH_ath_275 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00029 1 CH_atr_301 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 1 CH_atr_302 2 2 0.000476644
Brassica carinata ChrC03 1 CH_bca_78 4 6 0.0000000000553804
Cannabis sativa NC_044378.1 1 CH_cansat_236 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold407 1 CH_can_409 2 2 0.000495663
Corylus avellana 4 1 CH_cav_425 2 2 0.000460017
Citrus clementina scaffold_1 1 CH_ccl_326 2 2 0.0000820311
Cardamine hirsuta Chr6 1 CH_chi_372 2 2 0.000414723
Citrullus lanatus CG_Chr08 1 CH_cla_133 2 2 0.0000887115
Capsella rubella scaffold_6 1 CH_cru_377 2 2 0.000438693
Daucus carota DCARv2_Chr6 1 CH_dca_434 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_437 2 3 0.000403835
Erythranthe guttata scaffold_1 1 CH_egut_441 2 2 0.000436888
Fragaria vesca Fvb2 1 CH_fve_352 2 2 0.00017673
Helianthus annuus HanXRQChr13 1 CH_han_35 5 5 1.67259e-17
Lonicera japonica GWHAAZE00000008 1 CH_lonja_288 3 8 0.00000602257
Lonicera japonica GWHAAZE00000003 1 CH_lonja_640 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_26 6 7 1.58257e-18
Malus domestica Chr15 1 CH_mdo_165 3 3 0.00000000862825
Marchantia polymorpha scaffold_85 1 CH_mpo_80 2 2 0.000110442
Medicago truncatula chr3 1 CH_mtr_91 5 6 0.0000000000000323154
Nelumbo nucifera chr8 1 CH_nnu_461 2 3 0.000784787
Oryza sativa ssp. japonica chr10 1 CH_osa_99 3 6 0.0000000836696
Prunus persica Pp01 1 CH_ppe_154 3 3 0.00000000834721
Pisum sativum chr5LG3 1 CH_psa_67 3 3 0.00000000408165
Papaver somniferum NC_039364.1 1 CH_pso_588 2 2 0.000337849
Quercus lobata 5 1 CH_qlo_895 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_264 3 4 0.0000000953515
Rhododendron simsii chr08 1 CH_rsi_223 3 5 0.000000624551
Simmondsia chinensis GWHAASQ00000023 1 CH_sci_168 2 2 0.0000851426
Sechium edule LG03 1 CH_sed_306 2 2 0.000428052
Trochodendron aralioides group10 1 CH_tar_79 3 3 0.00000000540676
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_60 3 3 0.00000000859546
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_102 3 3 0.0000000518115
Arabidopsis lyrata scaffold_6 2 CH_aly_373 2 2 0.000396027
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_137 4 6 0.0000000000422609
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_206 3 3 0.0000000470566
Arabidopsis thaliana Chr5 2 CH_ath_275 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00029 2 CH_atr_301 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 2 CH_atr_302 2 2 0.000476644
Brassica carinata ChrC03 2 CH_bca_78 4 6 0.0000000000553804
Cannabis sativa NC_044378.1 2 CH_cansat_236 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold407 2 CH_can_409 2 2 0.000495663
Corylus avellana 4 2 CH_cav_425 2 2 0.000460017
Citrus clementina scaffold_1 2 CH_ccl_326 2 2 0.0000820311
Cardamine hirsuta Chr6 2 CH_chi_372 2 2 0.000414723
Citrullus lanatus CG_Chr08 2 CH_cla_133 2 2 0.0000887115
Capsella rubella scaffold_6 2 CH_cru_377 2 2 0.000438693
Daucus carota DCARv2_Chr6 2 CH_dca_434 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_437 2 3 0.000403835
Eucalyptus grandis Chr10 2 CH_egr_347 3 3 0.00000000513834
Erythranthe guttata scaffold_1 2 CH_egut_441 2 2 0.000436888
Fragaria vesca Fvb2 2 CH_fve_352 2 2 0.00017673
Helianthus annuus HanXRQChr13 2 CH_han_35 5 5 1.67259e-17
Lonicera japonica GWHAAZE00000008 2 CH_lonja_288 3 8 0.00000602257
Lonicera japonica GWHAAZE00000003 2 CH_lonja_640 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_26 6 7 1.58257e-18
Malus domestica Chr15 2 CH_mdo_165 3 3 0.00000000862825
Marchantia polymorpha scaffold_85 2 CH_mpo_80 2 2 0.000110442
Nelumbo nucifera chr8 2 CH_nnu_461 2 3 0.000784787
Oryza sativa ssp. japonica chr10 2 CH_osa_99 3 6 0.0000000836696
Prunus persica Pp01 2 CH_ppe_154 3 3 0.00000000834721
Pisum sativum chr5LG3 2 CH_psa_67 3 3 0.00000000408165
Papaver somniferum NC_039364.1 2 CH_pso_588 2 2 0.000337849
Quercus lobata 5 2 CH_qlo_895 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_264 3 4 0.0000000953515
Rhododendron simsii chr08 2 CH_rsi_223 3 5 0.000000624551
Simmondsia chinensis GWHAASQ00000023 2 CH_sci_168 2 2 0.0000851426
Sechium edule LG03 2 CH_sed_306 2 2 0.000428052
Trochodendron aralioides group10 2 CH_tar_79 3 3 0.00000000540676
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_60 3 3 0.00000000859546
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_102 3 3 0.0000000518115

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001