Functional clusters
Information
- Type MapMan
- Description Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-regulatory factor (ISTL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group5 | 1 | CH_ach_79 | 3 | 5 | 0.0000428607 |
| Brassica carinata | ChrB03 | 1 | CH_bca_142 | 4 | 4 | 0.00000000267818 |
| Brassica carinata | ChrB08 | 1 | CH_bca_555 | 3 | 4 | 0.0000270801 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_262 | 3 | 9 | 0.000155125 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_50 | 5 | 7 | 0.00000000000376739 |
| Citrullus lanatus | CG_Chr08 | 1 | CH_cla_79 | 3 | 3 | 0.00000429706 |
| Durio zibethinus | NW_019167860.1 | 1 | CH_dzi_245 | 3 | 7 | 0.000149801 |
| Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_304 | 4 | 30 | 0.0000125467 |
| Malus domestica | Chr03 | 1 | CH_mdo_55 | 6 | 9 | 0.0000000000000340931 |
| Prunus persica | Pp08 | 1 | CH_ppe_520 | 3 | 15 | 0.000832662 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_246 | 3 | 3 | 0.00000340777 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_682 | 3 | 13 | 0.000247717 |
| Trochodendron aralioides | group5 | 1 | CH_tar_235 | 3 | 5 | 0.0000523506 |
| Zea mays | 9 | 1 | CH_zma_24 | 5 | 5 | 0.00000000000172523 |
| Zea mays | 1 | 1 | CH_zma_48 | 4 | 4 | 0.00000000355143 |
| Actinidia chinensis | Lachesis_group5 | 2 | CH_ach_79 | 3 | 5 | 0.0000428607 |
| Brassica carinata | ChrB03 | 2 | CH_bca_142 | 4 | 4 | 0.00000000267818 |
| Brassica carinata | ChrB08 | 2 | CH_bca_555 | 3 | 4 | 0.0000270801 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_262 | 3 | 9 | 0.000155125 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_50 | 5 | 7 | 0.00000000000376739 |
| Citrullus lanatus | CG_Chr08 | 2 | CH_cla_79 | 3 | 3 | 0.00000429706 |
| Durio zibethinus | NW_019167860.1 | 2 | CH_dzi_245 | 3 | 7 | 0.000149801 |
| Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_304 | 4 | 30 | 0.0000125467 |
| Malus domestica | Chr03 | 2 | CH_mdo_55 | 6 | 9 | 0.0000000000000340931 |
| Prunus persica | Pp08 | 2 | CH_ppe_520 | 3 | 15 | 0.000832662 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_246 | 3 | 3 | 0.00000340777 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_682 | 3 | 13 | 0.000247717 |
| Trochodendron aralioides | group5 | 2 | CH_tar_235 | 3 | 5 | 0.0000523506 |
| Zea mays | 9 | 2 | CH_zma_24 | 5 | 5 | 0.00000000000172523 |
| Zea mays | 1 | 2 | CH_zma_48 | 4 | 4 | 0.00000000355143 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |