Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.mid-chain alkane hydroxylase (MAH1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB04 | 1 | CH_bca_1091 | 2 | 2 | 0.000769551 |
| Brassica carinata | ChrB07 | 1 | CH_bca_339 | 3 | 5 | 0.000000575698 |
| Brassica carinata | ChrC04 | 1 | CH_bca_473 | 3 | 11 | 0.00000949566 |
| Brassica napus | A09 | 1 | CH_bna_4 | 7 | 10 | 4.62279e-23 |
| Brassica napus | C09 | 1 | CH_bna_498 | 3 | 22 | 0.0000952965 |
| Brassica oleracea | C9 | 1 | CH_bol_159 | 3 | 23 | 0.00000283728 |
| Brassica rapa | A09 | 1 | CH_bra_4 | 7 | 9 | 1.7755e-23 |
| Capsella rubella | scaffold_2 | 1 | CH_cru_105 | 3 | 4 | 0.0000000320752 |
| Eutrema salsugineum | scaffold_8 | 1 | CH_esa_226 | 2 | 3 | 0.000228441 |
| Brassica carinata | ChrB04 | 2 | CH_bca_1091 | 2 | 2 | 0.000769551 |
| Brassica carinata | ChrB07 | 2 | CH_bca_339 | 3 | 5 | 0.000000575698 |
| Brassica carinata | ChrC04 | 2 | CH_bca_473 | 3 | 11 | 0.00000949566 |
| Brassica oleracea | C9 | 2 | CH_bol_159 | 3 | 23 | 0.00000283728 |
| Brassica rapa | A09 | 2 | CH_bra_4 | 7 | 9 | 1.7755e-23 |
| Capsella rubella | scaffold_2 | 2 | CH_cru_105 | 3 | 4 | 0.0000000320752 |
| Eutrema salsugineum | scaffold_8 | 2 | CH_esa_226 | 2 | 3 | 0.000228441 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |