Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.aldehyde decarbonylase component CER1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_42 5 25 0.0000000000589839
Avicennia marina ScioBoG_26180_HRSCAF_26306 1 CH_ama_82 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_622 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_623 2 2 0.000449075
Arabidopsis thaliana Chr1 1 CH_ath_266 2 2 0.0000859476
Brassica oleracea C4 1 CH_bol_337 2 2 0.000326861
Brassica rapa A04 1 CH_bra_300 2 3 0.000386368
Cannabis sativa NC_044370.1 1 CH_cansat_215 2 2 0.0000656642
Corylus avellana 1 1 CH_cav_462 2 5 0.000766607
Citrus clementina scaffold_3 1 CH_ccl_384 2 2 0.000246093
Carpinus fangiana scaffold9 1 CH_cfa_383 2 2 0.000757346
Cardamine hirsuta Chr1 1 CH_chi_212 2 2 0.0000691204
Carya illinoinensis Chr13 1 CH_cil_469 2 2 0.000371897
Cucumis melo chr06 1 CH_cme_77 3 3 0.0000000267031
Chenopodium quinoa C_Quinoa_Scaffold_1352 1 CH_cqu_140 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_1412 1 CH_cqu_141 3 3 0.0000000673536
Capsella rubella scaffold_1 1 CH_cru_359 2 2 0.000438693
Cucumis sativus L. chr3 1 CH_csa_93 3 3 0.0000000418111
Daucus carota DCARv2_Chr9 1 CH_dca_145 3 5 0.00000122006
Davidia involucrata GWHABJS00000016 1 CH_din_321 2 2 0.000150038
Durio zibethinus NW_019168048.1 1 CH_dzi_107 3 4 0.000000451094
Eucalyptus grandis Chr04 1 CH_egr_189 6 43 0.000000000000101761
Erythranthe guttata scaffold_2 1 CH_egut_415 2 2 0.000436888
Erythranthe guttata scaffold_14 1 CH_egut_416 2 2 0.000436888
Eutrema salsugineum scaffold_5 1 CH_esa_233 2 2 0.00022845
Fragaria x ananassa Fvb7-3 1 CH_fan_97 4 13 0.00000000970998
Fragaria vesca Fvb7 1 CH_fve_149 3 5 0.000000208209
Gossypium hirsutum A06 1 CH_ghi_294 3 4 0.000000513305
Gossypium hirsutum D06 1 CH_ghi_361 3 6 0.0000025661
Glycine max Gm03 1 CH_gma_134 3 3 0.0000000216099
Gossypium raimondii Chr10 1 CH_gra_126 3 3 0.0000000862255
Gossypium raimondii Chr12 1 CH_gra_437 2 2 0.00080416
Manihot esculenta Chromosome05 1 CH_mes_73 4 4 0.00000000000341561
Medicago truncatula chr7 1 CH_mtr_324 3 4 0.000000354476
Nelumbo nucifera chr1 1 CH_nnu_119 3 5 0.000000570258
Nelumbo nucifera chr4 1 CH_nnu_432 2 2 0.000654022
Punica granatum NC_045131.1 1 CH_pgr_89 3 3 0.0000000337834
Prunus persica Pp02 1 CH_ppe_67 5 11 0.000000000000107293
Populus trichocarpa Chr14 1 CH_ptr_197 3 6 0.000000400853
Phaseolus vulgaris Chr10 1 CH_pvu_262 2 2 0.0000734727
Quercus lobata 11 1 CH_qlo_1011 2 2 0.000774433
Quercus lobata 4 1 CH_qlo_256 4 7 0.000000000216723
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_76 7 54 0.0000000000000326015
Rhododendron simsii chr07 1 CH_rsi_143 3 3 0.00000000624652
Salvia bowleyana GWHASIU00000003 1 CH_sbo_47 5 11 0.0000000000000890786
Sechium edule LG12 1 CH_sed_290 2 2 0.000428052
Sequoiadendron giganteum chr8 1 CH_sgi_470 4 16 0.0000000220726
Selenicereus undatus Scaffold_33675 1 CH_sun_262 2 3 0.000653935
Theobroma cacao Chromosome_2 1 CH_tca_48 5 9 0.00000000000152213
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_297 2 2 0.000227092
Tripterygium wilfordii NC_052248.1 1 CH_twi_42 4 7 0.0000000000181945
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_95 3 4 0.000000051809
Vigna mungo CM024078.1 1 CH_vmu_85 3 5 0.0000000626227
Vanilla planifolia CM028161.1 1 CH_vpl_256 2 2 0.000221664
Vitis vinifera chr15 1 CH_vvi_88 5 39 0.000000000144394
Acer truncatum chr5 2 CH_acertr_42 5 25 0.0000000000589839
Avicennia marina ScioBoG_26180_HRSCAF_26306 2 CH_ama_82 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_622 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_623 2 2 0.000449075
Arabidopsis thaliana Chr1 2 CH_ath_266 2 2 0.0000859476
Brassica oleracea C4 2 CH_bol_337 2 2 0.000326861
Brassica rapa A04 2 CH_bra_300 2 3 0.000386368
Cannabis sativa NC_044370.1 2 CH_cansat_215 2 2 0.0000656642
Corylus avellana 1 2 CH_cav_462 2 5 0.000766607
Citrus clementina scaffold_3 2 CH_ccl_384 2 2 0.000246093
Carpinus fangiana scaffold9 2 CH_cfa_383 2 2 0.000757346
Cardamine hirsuta Chr1 2 CH_chi_212 2 2 0.0000691204
Carya illinoinensis Chr13 2 CH_cil_469 2 2 0.000371897
Cucumis melo chr06 2 CH_cme_77 3 3 0.0000000267031
Chenopodium quinoa C_Quinoa_Scaffold_1352 2 CH_cqu_140 3 3 0.0000000673536
Chenopodium quinoa C_Quinoa_Scaffold_1412 2 CH_cqu_141 3 3 0.0000000673536
Capsella rubella scaffold_1 2 CH_cru_359 2 2 0.000438693
Cucumis sativus L. chr3 2 CH_csa_93 3 3 0.0000000418111
Daucus carota DCARv2_Chr9 2 CH_dca_145 3 5 0.00000122006
Davidia involucrata GWHABJS00000016 2 CH_din_321 2 2 0.000150038
Durio zibethinus NW_019168048.1 2 CH_dzi_107 3 4 0.000000451094
Eucalyptus grandis Chr04 2 CH_egr_189 6 43 0.000000000000101761
Erythranthe guttata scaffold_2 2 CH_egut_415 2 2 0.000436888
Erythranthe guttata scaffold_14 2 CH_egut_416 2 2 0.000436888
Eutrema salsugineum scaffold_5 2 CH_esa_233 2 2 0.00022845
Fragaria x ananassa Fvb7-3 2 CH_fan_97 4 13 0.00000000970998
Fragaria vesca Fvb7 2 CH_fve_149 3 5 0.000000208209
Gossypium hirsutum A06 2 CH_ghi_294 3 4 0.000000513305
Gossypium hirsutum D06 2 CH_ghi_361 3 6 0.0000025661
Glycine max Gm03 2 CH_gma_134 3 3 0.0000000216099
Gossypium raimondii Chr10 2 CH_gra_126 3 3 0.0000000862255
Gossypium raimondii Chr12 2 CH_gra_437 2 2 0.00080416
Lotus japonicus chr3 2 CH_lja_312 2 2 0.000214523
Manihot esculenta Chromosome05 2 CH_mes_73 4 4 0.00000000000341561
Nelumbo nucifera chr1 2 CH_nnu_119 3 5 0.000000570258
Nelumbo nucifera chr4 2 CH_nnu_432 2 2 0.000654022
Punica granatum NC_045131.1 2 CH_pgr_89 3 3 0.0000000337834
Prunus persica Pp02 2 CH_ppe_67 5 11 0.000000000000107293
Populus trichocarpa Chr14 2 CH_ptr_197 3 6 0.000000400853
Phaseolus vulgaris Chr10 2 CH_pvu_262 2 2 0.0000734727
Quercus lobata 11 2 CH_qlo_1011 2 2 0.000774433
Quercus lobata 4 2 CH_qlo_256 4 7 0.000000000216723
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_76 7 54 0.0000000000000326015
Rhododendron simsii chr07 2 CH_rsi_143 3 3 0.00000000624652
Salvia bowleyana GWHASIU00000003 2 CH_sbo_47 5 11 0.0000000000000890786
Sechium edule LG12 2 CH_sed_290 2 2 0.000428052
Sequoiadendron giganteum chr8 2 CH_sgi_470 4 16 0.0000000220726
Selenicereus undatus Scaffold_33675 2 CH_sun_262 2 3 0.000653935
Theobroma cacao Chromosome_2 2 CH_tca_48 5 9 0.00000000000152213
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_297 2 2 0.000227092
Tripterygium wilfordii NC_052248.1 2 CH_twi_42 4 7 0.0000000000181945
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_95 3 4 0.000000051809
Vigna mungo CM024078.1 2 CH_vmu_85 3 5 0.0000000626227
Vanilla planifolia CM028161.1 2 CH_vpl_256 2 2 0.000221664
Vitis vinifera chr15 2 CH_vvi_88 5 39 0.000000000144394

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001