Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.fatty acyl CoA reductase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 1 | CH_aar_11 | 7 | 15 | 2.3377e-18 |
| Acer truncatum | chr3 | 1 | CH_acertr_57 | 4 | 6 | 0.000000000236473 |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_63 | 4 | 6 | 0.000000000905633 |
| Aquilegia oxysepala | CHR02 | 1 | CH_aox_10 | 7 | 25 | 1.00712e-17 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_213 | 4 | 9 | 0.0000000741152 |
| Brassica napus | C09 | 1 | CH_bna_478 | 3 | 9 | 0.0000767299 |
| Brassica oleracea | C9 | 1 | CH_bol_244 | 3 | 12 | 0.0000422698 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_355 | 3 | 31 | 0.000579728 |
| Capsicum annuum | PGAv.1.6.scaffold1577 | 1 | CH_can_171 | 3 | 5 | 0.0000010235 |
| Cicer arietinum L. | Ca_LG6_v3 | 1 | CH_car_268 | 2 | 2 | 0.000466981 |
| Corylus avellana | 6 | 1 | CH_cav_6 | 8 | 11 | 8.09938e-25 |
| Citrus clementina | scaffold_8 | 1 | CH_ccl_160 | 3 | 5 | 0.000000403705 |
| Carpinus fangiana | Cfa04 | 1 | CH_cfa_26 | 5 | 7 | 0.00000000000000518232 |
| Cucumis melo | chr11 | 1 | CH_cme_79 | 3 | 3 | 0.0000000267031 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3163 | 1 | CH_cqu_236 | 3 | 4 | 0.0000022223 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 1 | CH_cqu_258 | 3 | 5 | 0.00000555483 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4413 | 1 | CH_cqu_289 | 3 | 7 | 0.0000194355 |
| Capsella rubella | scaffold_15 | 1 | CH_cru_159 | 3 | 3 | 0.000000449069 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_184 | 3 | 4 | 0.00000179597 |
| Cucumis sativus L. | chr6 | 1 | CH_csa_258 | 2 | 2 | 0.000250428 |
| Davidia involucrata | GWHABJS00000007 | 1 | CH_din_42 | 4 | 7 | 0.0000000000131348 |
| Durio zibethinus | NW_019167871.1 | 1 | CH_dzi_312 | 2 | 3 | 0.000417124 |
| Erythranthe guttata | scaffold_14 | 1 | CH_egut_61 | 4 | 4 | 0.00000000000579155 |
| Eutrema salsugineum | scaffold_4 | 1 | CH_esa_118 | 3 | 4 | 0.0000029221 |
| Eutrema salsugineum | scaffold_2 | 1 | CH_esa_151 | 3 | 9 | 0.0000612998 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_146 | 3 | 3 | 0.000000182202 |
| Glycine max | Gm11 | 1 | CH_gma_67 | 4 | 4 | 0.0000000000206703 |
| Lotus japonicus | chr3 | 1 | CH_lja_176 | 3 | 5 | 0.00000153371 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_178 | 3 | 3 | 0.0000000215197 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_551 | 2 | 3 | 0.000925157 |
| Malus domestica | Chr03 | 1 | CH_mdo_92 | 4 | 5 | 0.0000000000286287 |
| Manihot esculenta | Chromosome11 | 1 | CH_mes_359 | 2 | 2 | 0.000183189 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_434 | 2 | 2 | 0.000654022 |
| Nelumbo nucifera | chr2 | 1 | CH_nnu_91 | 3 | 3 | 0.0000000570339 |
| Nicotiana tabacum | Nitab4.5_0000234 | 1 | CH_nta_40 | 3 | 6 | 0.000000361163 |
| Olea europaea | scaffold775 | 1 | CH_oeu_301 | 2 | 2 | 0.000320273 |
| Prunus persica | Pp06 | 1 | CH_ppe_76 | 4 | 4 | 0.00000000000124543 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_123 | 3 | 3 | 0.000000228572 |
| Papaver somniferum | NW_020624377.1 | 1 | CH_pso_356 | 4 | 33 | 0.00000835525 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_386 | 3 | 6 | 0.0000202315 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_175 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 1 | 1 | CH_qlo_198 | 5 | 10 | 0.00000000000338229 |
| Quercus lobata | 10 | 1 | CH_qlo_223 | 5 | 15 | 0.0000000000402788 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_427 | 3 | 8 | 0.0000160099 |
| Striga asiatica | scaffold22 | 1 | CH_sas_21 | 3 | 6 | 0.000000469245 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_267 | 3 | 21 | 0.0000412565 |
| Salvia bowleyana | GWHASIU00000006 | 1 | CH_sbo_412 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000009 | 1 | CH_sbr_281 | 2 | 2 | 0.000189042 |
| Simmondsia chinensis | GWHAASQ00000012 | 1 | CH_sci_34 | 5 | 45 | 0.00000000288099 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_75 | 8 | 15 | 2.17741e-22 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_153 | 3 | 3 | 0.000000103353 |
| Schrenkiella parvula | ch5-1 | 1 | CH_spa_289 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch11 | 1 | CH_spe_136 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch11 | 1 | CH_stu_177 | 3 | 3 | 0.000000137873 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_258 | 3 | 6 | 0.0000027566 |
| Selenicereus undatus | Scaffold_33675 | 1 | CH_sun_39 | 3 | 4 | 0.000000126717 |
| Trochodendron aralioides | group2 | 1 | CH_tar_347 | 2 | 2 | 0.00018011 |
| Theobroma cacao | Chromosome_7 | 1 | CH_tca_133 | 3 | 3 | 0.0000000321845 |
| Tarenaya hassleriana | NW_010965304.1 | 1 | CH_tha_174 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052238.1 | 1 | CH_twi_172 | 2 | 2 | 0.0000557507 |
| Utricularia gibba | unitig_27 | 1 | CH_ugi_22 | 3 | 3 | 0.0000000323787 |
| Vigna mungo | CM024076.1 | 1 | CH_vmu_121 | 3 | 6 | 0.00000125223 |
| Vigna mungo | CM024079.1 | 1 | CH_vmu_392 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr6 | 1 | CH_vvi_266 | 2 | 2 | 0.000076063 |
| Aethionema arabicum | LG-4 | 2 | CH_aar_11 | 7 | 15 | 2.3377e-18 |
| Acer truncatum | chr3 | 2 | CH_acertr_57 | 4 | 6 | 0.000000000236473 |
| Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_63 | 4 | 6 | 0.000000000905633 |
| Aquilegia oxysepala | CHR02 | 2 | CH_aox_10 | 7 | 25 | 1.00712e-17 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_213 | 4 | 9 | 0.0000000741152 |
| Brassica oleracea | C9 | 2 | CH_bol_244 | 3 | 12 | 0.0000422698 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_355 | 3 | 31 | 0.000579728 |
| Capsicum annuum | PGAv.1.6.scaffold1577 | 2 | CH_can_171 | 3 | 5 | 0.0000010235 |
| Cicer arietinum L. | Ca_LG6_v3 | 2 | CH_car_268 | 2 | 2 | 0.000466981 |
| Corylus avellana | 6 | 2 | CH_cav_6 | 8 | 11 | 8.09938e-25 |
| Citrus clementina | scaffold_8 | 2 | CH_ccl_160 | 3 | 5 | 0.000000403705 |
| Carpinus fangiana | Cfa04 | 2 | CH_cfa_26 | 5 | 7 | 0.00000000000000518232 |
| Cucumis melo | chr11 | 2 | CH_cme_79 | 3 | 3 | 0.0000000267031 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3163 | 2 | CH_cqu_236 | 3 | 4 | 0.0000022223 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 2 | CH_cqu_258 | 3 | 5 | 0.00000555483 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4413 | 2 | CH_cqu_289 | 3 | 7 | 0.0000194355 |
| Capsella rubella | scaffold_15 | 2 | CH_cru_159 | 3 | 3 | 0.000000449069 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_184 | 3 | 4 | 0.00000179597 |
| Cucumis sativus L. | chr6 | 2 | CH_csa_258 | 2 | 2 | 0.000250428 |
| Davidia involucrata | GWHABJS00000007 | 2 | CH_din_42 | 4 | 7 | 0.0000000000131348 |
| Durio zibethinus | NW_019167871.1 | 2 | CH_dzi_312 | 2 | 3 | 0.000417124 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_276 | 5 | 27 | 0.000000000148966 |
| Erythranthe guttata | scaffold_14 | 2 | CH_egut_61 | 4 | 4 | 0.00000000000579155 |
| Eutrema salsugineum | scaffold_4 | 2 | CH_esa_118 | 3 | 4 | 0.0000029221 |
| Eutrema salsugineum | scaffold_2 | 2 | CH_esa_151 | 3 | 9 | 0.0000612998 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_146 | 3 | 3 | 0.000000182202 |
| Glycine max | Gm11 | 2 | CH_gma_67 | 4 | 4 | 0.0000000000206703 |
| Lotus japonicus | chr3 | 2 | CH_lja_176 | 3 | 5 | 0.00000153371 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_178 | 3 | 3 | 0.0000000215197 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_551 | 2 | 3 | 0.000925157 |
| Malus domestica | Chr03 | 2 | CH_mdo_92 | 4 | 5 | 0.0000000000286287 |
| Manihot esculenta | Chromosome11 | 2 | CH_mes_359 | 2 | 2 | 0.000183189 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_434 | 2 | 2 | 0.000654022 |
| Nelumbo nucifera | chr2 | 2 | CH_nnu_91 | 3 | 3 | 0.0000000570339 |
| Nicotiana tabacum | Nitab4.5_0000234 | 2 | CH_nta_40 | 3 | 6 | 0.000000361163 |
| Olea europaea | scaffold775 | 2 | CH_oeu_301 | 2 | 2 | 0.000320273 |
| Prunus persica | Pp06 | 2 | CH_ppe_76 | 4 | 4 | 0.00000000000124543 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_123 | 3 | 3 | 0.000000228572 |
| Papaver somniferum | NW_020624377.1 | 2 | CH_pso_356 | 4 | 33 | 0.00000835525 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_386 | 3 | 6 | 0.0000202315 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_175 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 1 | 2 | CH_qlo_198 | 5 | 10 | 0.00000000000338229 |
| Quercus lobata | 10 | 2 | CH_qlo_223 | 5 | 15 | 0.0000000000402788 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_427 | 3 | 8 | 0.0000160099 |
| Striga asiatica | scaffold22 | 2 | CH_sas_21 | 3 | 6 | 0.000000469245 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_267 | 3 | 21 | 0.0000412565 |
| Salvia bowleyana | GWHASIU00000006 | 2 | CH_sbo_412 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000009 | 2 | CH_sbr_281 | 2 | 2 | 0.000189042 |
| Simmondsia chinensis | GWHAASQ00000012 | 2 | CH_sci_34 | 5 | 45 | 0.00000000288099 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_75 | 8 | 15 | 2.17741e-22 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_153 | 3 | 3 | 0.000000103353 |
| Schrenkiella parvula | ch5-1 | 2 | CH_spa_289 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch11 | 2 | CH_spe_136 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch11 | 2 | CH_stu_177 | 3 | 3 | 0.000000137873 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_258 | 3 | 6 | 0.0000027566 |
| Selenicereus undatus | Scaffold_33675 | 2 | CH_sun_39 | 3 | 4 | 0.000000126717 |
| Trochodendron aralioides | group2 | 2 | CH_tar_347 | 2 | 2 | 0.00018011 |
| Theobroma cacao | Chromosome_7 | 2 | CH_tca_133 | 3 | 3 | 0.0000000321845 |
| Tarenaya hassleriana | NW_010965304.1 | 2 | CH_tha_174 | 2 | 2 | 0.000419082 |
| Tripterygium wilfordii | NC_052238.1 | 2 | CH_twi_172 | 2 | 2 | 0.0000557507 |
| Utricularia gibba | unitig_27 | 2 | CH_ugi_22 | 3 | 3 | 0.0000000323787 |
| Vigna mungo | CM024076.1 | 2 | CH_vmu_121 | 3 | 6 | 0.00000125223 |
| Vigna mungo | CM024079.1 | 2 | CH_vmu_392 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr6 | 2 | CH_vvi_266 | 2 | 2 | 0.000076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |