Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cutin and suberin.cuticular lipid formation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_176 4 13 0.000162913
Cardamine hirsuta Chr8 1 CH_chi_330 3 4 0.000241605
Medicago truncatula chr4 1 CH_mtr_167 7 37 0.00000000017337
Papaver somniferum NC_039363.1 1 CH_pso_132 5 6 0.000000000260836
Trifolium pratense Tp57577_TGAC_v2_scaf_431 1 CH_tpr_66 5 11 0.0000000134494
Aethionema arabicum LG-1 2 CH_aar_176 4 13 0.000162913
Cardamine hirsuta Chr8 2 CH_chi_330 3 4 0.000241605
Papaver somniferum NC_039363.1 2 CH_pso_132 5 6 0.000000000260836
Trifolium pratense Tp57577_TGAC_v2_scaf_431 2 CH_tpr_66 5 11 0.0000000134494

Available child term results

Ontology identifier Description Number of clusters
21.9.1.1 Cell wall organisation.cutin and suberin.cuticular lipid formation.fatty acyl omega-hydroxylase (CYP86A) 4
21.9.1.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.fatty acyl in-chain hydroxylase 20
21.9.1.3 Cell wall organisation.cutin and suberin.cuticular lipid formation.very-long-chain fatty acyl omega-hydroxylase (CYP86B) 1
21.9.1.5.1 Cell wall organisation.cutin and suberin.cuticular lipid formation.monoacylglyceryl ester monomer biosynthesis.cutin sn-glycerol-3-phosphate acyltransferase 4
21.9.1.5.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.monoacylglyceryl ester monomer biosynthesis.suberin sn-glycerol-3-phosphate acyltransferase 6
21.9.1.6.1 Cell wall organisation.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.fatty acyl CoA reductase 128
21.9.1.6.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.wax ester synthase and diacylglycerol acyltransferase 90
21.9.1.7.1.1 Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.aldehyde decarbonylase component CER1 110
21.9.1.7.1.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.aldehyde-generating component CER3 11
21.9.1.7.1.3.1 Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.electron supply module.NADH:cytochrome-b5 reductase (CBR) 4
21.9.1.7.1.3.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.electron supply module.electron shuttle hemoprotein (Cyt-b5) 12
21.9.1.7.2 Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.mid-chain alkane hydroxylase (MAH1) 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001