Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall hydroxycinnamic acids.hydroxycinnamaldehyde dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 1 CH_amhyb_162 2 2 0.0000841751
Aquilegia oxysepala CHR01 1 CH_aox_305 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_238 3 7 0.000000188207
Camellia sinensis var. sinensis Chr14 1 CH_camsi_557 2 2 0.0000458547
Cannabis sativa NC_044371.1 1 CH_cansat_48 5 21 0.00000000000283646
Cicer arietinum L. Ca_LG8_v3 1 CH_car_240 2 2 0.00023349
Coffea canephora chr6 1 CH_ccan_354 2 12 0.000702697
Citrus clementina scaffold_1 1 CH_ccl_381 2 3 0.000246083
Carpinus fangiana Cfa01 1 CH_cfa_85 3 3 0.00000000860393
Carya illinoinensis Chr04 1 CH_cil_11 10 10 6.3236e-33
Eucalyptus grandis Chr03 1 CH_egr_93 6 7 1.08191e-19
Fragaria x ananassa Fvb1-4 1 CH_fan_442 2 2 0.000185036
Fragaria vesca Fvb1 1 CH_fve_116 3 4 0.0000000208224
Glycine max Gm09 1 CH_gma_173 3 3 0.000000181524
Gossypium raimondii Chr01 1 CH_gra_377 2 2 0.000321664
Lupinus albus Lalb_Chr22 1 CH_lal_424 2 2 0.000787236
Lonicera japonica GWHAAZE00000007 1 CH_lonja_447 2 3 0.000179657
Malus domestica Chr02 1 CH_mdo_68 4 4 0.000000000000818014
Manihot esculenta Chromosome16 1 CH_mes_304 2 2 0.0000610631
Nelumbo nucifera chr2 1 CH_nnu_336 2 2 0.000130804
Oryza sativa ssp. japonica chr01 1 CH_osa_300 2 3 0.000316857
Petunia axillaris Peaxi162Scf00560 1 CH_pax_319 2 2 0.000422134
Petunia axillaris Peaxi162Scf00546 1 CH_pax_320 2 2 0.000422134
Punica granatum NC_045129.1 1 CH_pgr_45 4 5 0.00000000000633763
Papaver somniferum NC_039359.1 1 CH_pso_492 2 2 0.00013514
Papaver somniferum NC_039359.1 1 CH_pso_616 2 3 0.000405408
Phaseolus vulgaris Chr02 1 CH_pvu_429 2 2 0.000440836
Phaseolus vulgaris Chr04 1 CH_pvu_430 2 2 0.000440836
Quercus lobata CM012294 1 CH_qlo_318 3 3 0.00000000399842
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_234 3 3 0.0000000238391
Salix brachista GWHAAZH00000018 1 CH_sbr_238 2 2 0.000063014
Simmondsia chinensis GWHAASQ00000018 1 CH_sci_235 2 2 0.000255428
Sequoiadendron giganteum chr4 1 CH_sgi_1148 2 2 0.000146145
Tarenaya hassleriana NW_010966542.1 1 CH_tha_189 2 2 0.000419082
Tarenaya hassleriana NW_010971390.1 1 CH_tha_190 2 2 0.000419082
Tripterygium wilfordii NC_052235.1 1 CH_twi_225 2 2 0.000167252
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_342 2 2 0.000278772
Vigna mungo CM024069.1 1 CH_vmu_363 2 2 0.000387685
Vigna mungo CM024077.1 1 CH_vmu_364 2 2 0.000387685
Zea mays 3 1 CH_zma_163 2 2 0.0000511313
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 2 CH_amhyb_162 2 2 0.0000841751
Aquilegia oxysepala CHR01 2 CH_aox_305 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_238 3 7 0.000000188207
Camellia sinensis var. sinensis Chr14 2 CH_camsi_557 2 2 0.0000458547
Cannabis sativa NC_044371.1 2 CH_cansat_48 5 21 0.00000000000283646
Cicer arietinum L. Ca_LG8_v3 2 CH_car_240 2 2 0.00023349
Coffea canephora chr6 2 CH_ccan_354 2 12 0.000702697
Citrus clementina scaffold_1 2 CH_ccl_381 2 3 0.000246083
Carpinus fangiana Cfa01 2 CH_cfa_85 3 3 0.00000000860393
Carya illinoinensis Chr04 2 CH_cil_11 10 10 6.3236e-33
Eucalyptus grandis Chr03 2 CH_egr_93 6 7 1.08191e-19
Fragaria x ananassa Fvb1-4 2 CH_fan_442 2 2 0.000185036
Fragaria vesca Fvb1 2 CH_fve_116 3 4 0.0000000208224
Glycine max Gm09 2 CH_gma_173 3 3 0.000000181524
Gossypium raimondii Chr01 2 CH_gra_377 2 2 0.000321664
Lupinus albus Lalb_Chr22 2 CH_lal_424 2 2 0.000787236
Lotus japonicus chr4 2 CH_lja_380 2 2 0.000429046
Lonicera japonica GWHAAZE00000007 2 CH_lonja_447 2 3 0.000179657
Malus domestica Chr02 2 CH_mdo_68 4 4 0.000000000000818014
Manihot esculenta Chromosome16 2 CH_mes_304 2 2 0.0000610631
Nelumbo nucifera chr2 2 CH_nnu_336 2 2 0.000130804
Oryza sativa ssp. japonica chr01 2 CH_osa_300 2 3 0.000316857
Petunia axillaris Peaxi162Scf00560 2 CH_pax_319 2 2 0.000422134
Petunia axillaris Peaxi162Scf00546 2 CH_pax_320 2 2 0.000422134
Punica granatum NC_045129.1 2 CH_pgr_45 4 5 0.00000000000633763
Papaver somniferum NC_039359.1 2 CH_pso_492 2 2 0.00013514
Papaver somniferum NC_039359.1 2 CH_pso_616 2 3 0.000405408
Phaseolus vulgaris Chr02 2 CH_pvu_429 2 2 0.000440836
Phaseolus vulgaris Chr04 2 CH_pvu_430 2 2 0.000440836
Quercus lobata CM012294 2 CH_qlo_318 3 3 0.00000000399842
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_234 3 3 0.0000000238391
Salix brachista GWHAAZH00000018 2 CH_sbr_238 2 2 0.000063014
Simmondsia chinensis GWHAASQ00000018 2 CH_sci_235 2 2 0.000255428
Sequoiadendron giganteum chr4 2 CH_sgi_1148 2 2 0.000146145
Tarenaya hassleriana NW_010966542.1 2 CH_tha_189 2 2 0.000419082
Tarenaya hassleriana NW_010971390.1 2 CH_tha_190 2 2 0.000419082
Tripterygium wilfordii NC_052235.1 2 CH_twi_225 2 2 0.000167252
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_342 2 2 0.000278772
Vigna mungo CM024069.1 2 CH_vmu_363 2 2 0.000387685
Vigna mungo CM024077.1 2 CH_vmu_364 2 2 0.000387685
Zea mays 3 2 CH_zma_163 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001