Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.expansin activities.beta-like-class expansin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C07 1 CH_bna_143 4 20 0.00000000649218
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_234 2 3 0.000248375
Camellia sinensis var. sinensis Chr12 1 CH_camsi_354 4 27 0.00000106285
Cannabis sativa NC_044374.1 1 CH_cansat_70 4 7 0.000000000148632
Capsicum annuum PGAv.1.6.scaffold572 1 CH_can_168 3 3 0.000000859922
Coffea canephora chr8 1 CH_ccan_10 5 40 0.0000000000000340897
Citrus clementina scaffold_3 1 CH_ccl_163 3 4 0.000000403721
Carya illinoinensis Chr11 1 CH_cil_86 5 10 0.00000000000058569
Chenopodium quinoa C_Quinoa_Scaffold_1817 1 CH_cqu_76 4 6 0.000000000167527
Daucus carota DCARv2_Chr7 1 CH_dca_314 2 2 0.000191333
Gossypium hirsutum D08 1 CH_ghi_277 3 3 0.000000235284
Gossypium hirsutum A08 1 CH_ghi_319 3 4 0.00000094104
Glycine max Gm05 1 CH_gma_249 3 4 0.00000393226
Glycine max Gm17 1 CH_gma_50 5 7 0.000000000000981386
Gossypium raimondii Chr04 1 CH_gra_128 3 3 0.0000000862255
Lotus japonicus chr4 1 CH_lja_138 3 3 0.000000268461
Manihot esculenta Chromosome17 1 CH_mes_426 2 2 0.000366379
Nicotiana tabacum Nitab4.5_0000500 1 CH_nta_147 2 2 0.000329182
Petunia axillaris Peaxi162Scf00301 1 CH_pax_42 4 6 0.000000000548428
Punica granatum NC_045130.1 1 CH_pgr_182 3 28 0.0000276426
Pisum sativum chr4LG4 1 CH_psa_366 2 3 0.000469451
Phaseolus vulgaris Chr03 1 CH_pvu_482 3 34 0.000965545
Quercus lobata 12 1 CH_qlo_395 3 4 0.0000000639718
Rhododendron simsii chr02 1 CH_rsi_135 4 11 0.00000000398853
Sequoiadendron giganteum chr7 1 CH_sgi_202 5 5 0.000000000000184528
Sequoiadendron giganteum chr1 1 CH_sgi_620 3 3 0.00000199351
Solanum lycopersicum SL4.0ch08 1 CH_sly_487 2 2 0.000352164
Solanum pennellii Spenn-ch08 1 CH_spe_516 3 53 0.000693269
Solanum tuberosum ST4.03ch08 1 CH_stu_169 3 3 0.0000000787843
Theobroma cacao Chromosome_3 1 CH_tca_403 3 71 0.000458732
Tarenaya hassleriana NW_010963717.1 1 CH_tha_214 2 2 0.00069847
Tarenaya hassleriana NW_010965019.1 1 CH_tha_215 2 2 0.00069847
Vigna mungo CM024069.1 1 CH_vmu_354 2 2 0.000387685
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_234 2 3 0.000248375
Camellia sinensis var. sinensis Chr12 2 CH_camsi_354 4 27 0.00000106285
Cannabis sativa NC_044374.1 2 CH_cansat_70 4 7 0.000000000148632
Capsicum annuum PGAv.1.6.scaffold572 2 CH_can_168 3 3 0.000000859922
Coffea canephora chr8 2 CH_ccan_10 5 40 0.0000000000000340897
Citrus clementina scaffold_3 2 CH_ccl_163 3 4 0.000000403721
Carya illinoinensis Chr11 2 CH_cil_86 5 10 0.00000000000058569
Chenopodium quinoa C_Quinoa_Scaffold_1817 2 CH_cqu_76 4 6 0.000000000167527
Daucus carota DCARv2_Chr7 2 CH_dca_314 2 2 0.000191333
Eucalyptus grandis Chr05 2 CH_egr_412 4 38 0.0000000443558
Gossypium hirsutum D08 2 CH_ghi_277 3 3 0.000000235284
Gossypium hirsutum A08 2 CH_ghi_319 3 4 0.00000094104
Glycine max Gm05 2 CH_gma_249 3 4 0.00000393226
Glycine max Gm17 2 CH_gma_50 5 7 0.000000000000981386
Gossypium raimondii Chr04 2 CH_gra_128 3 3 0.0000000862255
Lotus japonicus chr4 2 CH_lja_138 3 3 0.000000268461
Manihot esculenta Chromosome17 2 CH_mes_426 2 2 0.000366379
Nicotiana tabacum Nitab4.5_0000500 2 CH_nta_147 2 2 0.000329182
Petunia axillaris Peaxi162Scf00301 2 CH_pax_42 4 6 0.000000000548428
Punica granatum NC_045130.1 2 CH_pgr_182 3 28 0.0000276426
Pisum sativum chr4LG4 2 CH_psa_366 2 3 0.000469451
Phaseolus vulgaris Chr03 2 CH_pvu_482 3 34 0.000965545
Quercus lobata 12 2 CH_qlo_395 3 4 0.0000000639718
Rhododendron simsii chr02 2 CH_rsi_135 4 11 0.00000000398853
Sequoiadendron giganteum chr7 2 CH_sgi_202 5 5 0.000000000000184528
Sequoiadendron giganteum chr1 2 CH_sgi_620 3 3 0.00000199351
Solanum lycopersicum SL4.0ch08 2 CH_sly_487 2 2 0.000352164
Solanum pennellii Spenn-ch08 2 CH_spe_516 3 53 0.000693269
Solanum tuberosum ST4.03ch08 2 CH_stu_169 3 3 0.0000000787843
Theobroma cacao Chromosome_3 2 CH_tca_403 3 71 0.000458732
Tarenaya hassleriana NW_010963717.1 2 CH_tha_214 2 2 0.00069847
Tarenaya hassleriana NW_010965019.1 2 CH_tha_215 2 2 0.00069847
Vigna mungo CM024069.1 2 CH_vmu_354 2 2 0.000387685

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001