Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.expansin activities.alpha-like-class expansin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_322 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_15 4 4 0.0000000000089474
Arabidopsis thaliana Chr3 1 CH_ath_331 2 3 0.000257837
Beta vulgaris Chr9_EL10_PGA_scaffold8 1 CH_bvu_103 3 5 0.000000411226
Citrullus lanatus CG_Chr02 1 CH_cla_132 2 2 0.0000887115
Cucumis melo chr01 1 CH_cme_8 8 12 8.25547e-24
Chenopodium quinoa C_Quinoa_Scaffold_1040 1 CH_cqu_136 3 3 0.0000000336768
Chenopodium quinoa C_Quinoa_Scaffold_1257 1 CH_cqu_503 2 2 0.000473821
Capsella rubella scaffold_5 1 CH_cru_334 2 2 0.000219346
Cucumis sativus L. chr7 1 CH_csa_14 6 6 6.38658e-19
Quercus lobata 11 1 CH_qlo_293 4 20 0.00000000199962
Sequoiadendron giganteum chr11 1 CH_sgi_66 8 12 4.56962e-24
Vanilla planifolia CM028156.1 1 CH_vpl_359 2 5 0.000738798
Arabidopsis lyrata scaffold_5 2 CH_aly_322 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_15 4 4 0.0000000000089474
Arabidopsis thaliana Chr3 2 CH_ath_331 2 3 0.000257837
Beta vulgaris Chr9_EL10_PGA_scaffold8 2 CH_bvu_103 3 5 0.000000411226
Citrullus lanatus CG_Chr02 2 CH_cla_132 2 2 0.0000887115
Cucumis melo chr01 2 CH_cme_8 8 12 8.25547e-24
Chenopodium quinoa C_Quinoa_Scaffold_1040 2 CH_cqu_136 3 3 0.0000000336768
Chenopodium quinoa C_Quinoa_Scaffold_1257 2 CH_cqu_503 2 2 0.000473821
Capsella rubella scaffold_5 2 CH_cru_334 2 2 0.000219346
Cucumis sativus L. chr7 2 CH_csa_14 6 6 6.38658e-19
Quercus lobata 11 2 CH_qlo_293 4 20 0.00000000199962
Sequoiadendron giganteum chr11 2 CH_sgi_66 8 12 4.56962e-24
Vanilla planifolia CM028156.1 2 CH_vpl_359 2 5 0.000738798

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001