Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.classical arabinogalactan protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr4 1 CH_camsi_48 5 6 0.00000000000000119383
Cannabis sativa NC_044377.1 1 CH_cansat_78 4 5 0.00000000053508
Carica papaya supercontig_42 1 CH_cpa_305 2 2 0.000285198
Medicago truncatula chr4 1 CH_mtr_221 4 6 0.00000000742514
Medicago truncatula chr6 1 CH_mtr_643 3 9 0.000144433
Prunus persica Pp08 1 CH_ppe_28 8 9 1.59518e-21
Pisum sativum chr1LG6 1 CH_psa_49 5 17 0.000000000441247
Quercus lobata 11 1 CH_qlo_254 4 4 0.00000000020438
Rhododendron simsii chr01 1 CH_rsi_580 2 2 0.000967961
Solanum pennellii Spenn-ch12 1 CH_spe_63 4 4 0.0000000000871225
Solanum tuberosum ST4.03ch12 1 CH_stu_108 4 5 0.00000000066608
Camellia sinensis var. sinensis Chr4 2 CH_camsi_48 5 6 0.00000000000000119383
Cannabis sativa NC_044377.1 2 CH_cansat_78 4 5 0.00000000053508
Carica papaya supercontig_42 2 CH_cpa_305 2 2 0.000285198
Prunus persica Pp08 2 CH_ppe_28 8 9 1.59518e-21
Pisum sativum chr1LG6 2 CH_psa_49 5 17 0.000000000441247
Quercus lobata 11 2 CH_qlo_254 4 4 0.00000000020438
Rhododendron simsii chr01 2 CH_rsi_580 2 2 0.000967961
Solanum pennellii Spenn-ch12 2 CH_spe_63 4 4 0.0000000000871225
Solanum tuberosum ST4.03ch12 2 CH_stu_108 4 5 0.00000000066608

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001