Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.non-catalytic polygalacturonase regulator

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_236 2 2 0.000547395
Actinidia chinensis Lachesis_group16 1 CH_ach_235 2 2 0.000543213
Actinidia chinensis Lachesis_group12 1 CH_ach_236 2 2 0.000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_730 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_731 2 2 0.000838273
Brassica carinata ChrB03 1 CH_bca_926 2 2 0.000448905
Camellia sinensis var. sinensis Chr10 1 CH_camsi_307 3 5 0.00000031537
Citrus clementina scaffold_4 1 CH_ccl_130 3 3 0.0000000403763
Carica papaya supercontig_69 1 CH_cpa_6 5 6 0.0000000000000220573
Eucalyptus grandis Chr02 1 CH_egr_23 10 12 2.49002e-31
Lonicera japonica GWHAAZE00000006 1 CH_lonja_539 2 2 0.000359324
Manihot esculenta Chromosome13 1 CH_mes_457 2 2 0.000610631
Manihot esculenta Chromosome12 1 CH_mes_458 2 2 0.000610631
Medicago truncatula chr8 1 CH_mtr_311 3 3 0.000000303862
Medicago truncatula chr5 1 CH_mtr_312 3 3 0.000000303862
Nicotiana tabacum Nitab4.5_0000203 1 CH_nta_101 2 2 0.000109727
Prunus persica Pp01 1 CH_ppe_407 2 2 0.000223789
Quercus lobata 3 1 CH_qlo_177 6 25 0.000000000000673741
Quercus lobata 11 1 CH_qlo_559 3 5 0.000006595
Sequoiadendron giganteum chr9 1 CH_sgi_245 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch05 1 CH_sly_68 4 4 0.00000000000303328
Solanum pennellii Spenn-ch05 1 CH_spe_51 4 4 0.00000000000132004
Solanum tuberosum ST4.03ch05 1 CH_stu_30 6 10 1.16895e-17
Selenicereus undatus Scaffold_3410 1 CH_sun_180 2 3 0.000217984
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_94 3 4 0.000000137518
Tripterygium wilfordii NC_052237.1 1 CH_twi_286 2 2 0.000557507
Utricularia gibba unitig_8 1 CH_ugi_86 3 3 0.00000231508
Vigna mungo CM024069.1 1 CH_vmu_391 2 2 0.000646141
Aethionema arabicum LG-4 2 CH_aar_236 2 2 0.000547395
Actinidia chinensis Lachesis_group16 2 CH_ach_235 2 2 0.000543213
Actinidia chinensis Lachesis_group12 2 CH_ach_236 2 2 0.000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_730 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_731 2 2 0.000838273
Brassica carinata ChrB03 2 CH_bca_926 2 2 0.000448905
Camellia sinensis var. sinensis Chr10 2 CH_camsi_307 3 5 0.00000031537
Citrus clementina scaffold_4 2 CH_ccl_130 3 3 0.0000000403763
Carica papaya supercontig_69 2 CH_cpa_6 5 6 0.0000000000000220573
Eucalyptus grandis Chr02 2 CH_egr_23 10 12 2.49002e-31
Lotus japonicus chr4 2 CH_lja_406 2 2 0.000715077
Lonicera japonica GWHAAZE00000006 2 CH_lonja_539 2 2 0.000359324
Manihot esculenta Chromosome13 2 CH_mes_457 2 2 0.000610631
Manihot esculenta Chromosome12 2 CH_mes_458 2 2 0.000610631
Nicotiana tabacum Nitab4.5_0000203 2 CH_nta_101 2 2 0.000109727
Prunus persica Pp01 2 CH_ppe_407 2 2 0.000223789
Quercus lobata 3 2 CH_qlo_177 6 25 0.000000000000673741
Quercus lobata 11 2 CH_qlo_559 3 5 0.000006595
Sequoiadendron giganteum chr9 2 CH_sgi_245 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch05 2 CH_sly_68 4 4 0.00000000000303328
Solanum pennellii Spenn-ch05 2 CH_spe_51 4 4 0.00000000000132004
Solanum tuberosum ST4.03ch05 2 CH_stu_30 6 10 1.16895e-17
Selenicereus undatus Scaffold_3410 2 CH_sun_180 2 3 0.000217984
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_94 3 4 0.000000137518
Tripterygium wilfordii NC_052237.1 2 CH_twi_286 2 2 0.000557507
Utricularia gibba unitig_8 2 CH_ugi_86 3 3 0.00000231508
Vigna mungo CM024069.1 2 CH_vmu_391 2 2 0.000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001