Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_494 2 2 0.000422982
Arabidopsis lyrata scaffold_7 1 CH_aly_76 3 3 0.00000000653509
Aquilegia oxysepala CHR01 1 CH_aox_220 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_769 2 3 0.000898109
Arabidopsis thaliana Chr4 1 CH_ath_218 2 2 0.0000286492
Brassica oleracea C1 1 CH_bol_273 2 2 0.0000980584
Brassica rapa A01 1 CH_bra_264 2 2 0.000257588
Camellia sinensis var. sinensis Chr8 1 CH_camsi_241 3 4 0.0000000504629
Cicer arietinum L. Ca_LG1_v3 1 CH_car_56 3 8 0.000000508753
Coffea canephora chr9 1 CH_ccan_343 2 21 0.000651591
Citrus clementina scaffold_2 1 CH_ccl_448 2 2 0.000492187
Cardamine hirsuta Chr7 1 CH_chi_343 2 4 0.000414694
Carya illinoinensis Chr09 1 CH_cil_480 2 2 0.000371897
Carica papaya supercontig_30 1 CH_cpa_50 3 3 0.0000000542279
Capsella rubella scaffold_7 1 CH_cru_260 2 2 0.0000731154
Daucus carota DCARv2_Chr1 1 CH_dca_466 2 2 0.000956663
Daucus carota DCARv2_Chr2 1 CH_dca_467 2 2 0.000956663
Davidia involucrata GWHABJS00000002 1 CH_din_109 3 3 0.0000000375197
Davidia involucrata GWHABJS00000005 1 CH_din_466 2 2 0.000500125
Durio zibethinus NW_019167915.1 1 CH_dzi_280 2 2 0.000278093
Erythranthe guttata scaffold_13 1 CH_egut_296 2 2 0.0000728147
Eutrema salsugineum scaffold_1 1 CH_esa_168 2 2 0.0000761499
Fragaria x ananassa Fvb3-1 1 CH_fan_589 2 2 0.00066613
Fragaria vesca Fvb3 1 CH_fve_341 2 2 0.00017673
Lupinus albus Lalb_Chr15 1 CH_lal_354 2 2 0.000524824
Lupinus albus Lalb_Chr18 1 CH_lal_355 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_393 2 2 0.000154202
Magnolia biondii Chr02 1 CH_mbi_183 3 3 0.000000297199
Magnolia biondii Chr18 1 CH_mbi_68 6 49 0.00000000000711091
Malus domestica Chr05 1 CH_mdo_557 2 2 0.000227527
Manihot esculenta Chromosome16 1 CH_mes_414 2 2 0.000366379
Nelumbo nucifera chr7 1 CH_nnu_352 2 4 0.000261597
Petunia axillaris Peaxi162Scf00199 1 CH_pax_232 2 3 0.00021106
Prunus persica Pp04 1 CH_ppe_486 2 3 0.000671324
Populus trichocarpa Chr03 1 CH_ptr_111 4 9 0.000000000364899
Quercus lobata 4 1 CH_qlo_153 6 28 0.0000000000000881382
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_584 2 2 0.000119596
Striga asiatica scaffold175 1 CH_sas_62 2 3 0.0000625371
Salix brachista GWHAAZH00000003 1 CH_sbr_102 3 4 0.000000095296
Sequoiadendron giganteum chr5 1 CH_sgi_1094 2 2 0.000146145
Sapria himalayana scaffold54_3822261 1 CH_shi_133 3 20 0.000111647
Solanum lycopersicum SL4.0ch02 1 CH_sly_328 2 2 0.0000586941
Schrenkiella parvula ch7-4 1 CH_spa_167 2 2 0.000078734
Solanum pennellii Spenn-ch02 1 CH_spe_284 2 2 0.000044479
Solanum tuberosum ST4.03ch02 1 CH_stu_380 2 2 0.0000512453
Trochodendron aralioides group6 1 CH_tar_552 2 2 0.000900549
Theobroma cacao Chromosome_2 1 CH_tca_344 2 2 0.000219716
Tarenaya hassleriana NW_010960187.1 1 CH_tha_141 2 2 0.000209541
Tripterygium wilfordii NC_052247.1 1 CH_twi_284 2 2 0.000557507
Tripterygium wilfordii NC_052252.1 1 CH_twi_285 2 2 0.000557507
Vanilla planifolia CM028150.1 1 CH_vpl_16 4 4 0.00000000000605147
Vitis vinifera chr1 1 CH_vvi_338 2 2 0.000228189
Acer truncatum chr3 2 CH_acertr_494 2 2 0.000422982
Arabidopsis lyrata scaffold_7 2 CH_aly_76 3 3 0.00000000653509
Aquilegia oxysepala CHR01 2 CH_aox_220 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_769 2 3 0.000898109
Arabidopsis thaliana Chr4 2 CH_ath_218 2 2 0.0000286492
Brassica oleracea C1 2 CH_bol_273 2 2 0.0000980584
Brassica rapa A01 2 CH_bra_264 2 2 0.000257588
Camellia sinensis var. sinensis Chr8 2 CH_camsi_241 3 4 0.0000000504629
Cicer arietinum L. Ca_LG1_v3 2 CH_car_56 3 8 0.000000508753
Coffea canephora chr9 2 CH_ccan_343 2 21 0.000651591
Citrus clementina scaffold_2 2 CH_ccl_448 2 2 0.000492187
Cardamine hirsuta Chr7 2 CH_chi_343 2 4 0.000414694
Carya illinoinensis Chr09 2 CH_cil_480 2 2 0.000371897
Carica papaya supercontig_30 2 CH_cpa_50 3 3 0.0000000542279
Capsella rubella scaffold_7 2 CH_cru_260 2 2 0.0000731154
Daucus carota DCARv2_Chr1 2 CH_dca_466 2 2 0.000956663
Daucus carota DCARv2_Chr2 2 CH_dca_467 2 2 0.000956663
Davidia involucrata GWHABJS00000002 2 CH_din_109 3 3 0.0000000375197
Davidia involucrata GWHABJS00000005 2 CH_din_466 2 2 0.000500125
Durio zibethinus NW_019167915.1 2 CH_dzi_280 2 2 0.000278093
Erythranthe guttata scaffold_13 2 CH_egut_296 2 2 0.0000728147
Eutrema salsugineum scaffold_1 2 CH_esa_168 2 2 0.0000761499
Fragaria x ananassa Fvb3-1 2 CH_fan_589 2 2 0.00066613
Fragaria vesca Fvb3 2 CH_fve_341 2 2 0.00017673
Lupinus albus Lalb_Chr15 2 CH_lal_354 2 2 0.000524824
Lupinus albus Lalb_Chr18 2 CH_lal_355 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_393 2 2 0.000154202
Magnolia biondii Chr02 2 CH_mbi_183 3 3 0.000000297199
Magnolia biondii Chr18 2 CH_mbi_68 6 49 0.00000000000711091
Malus domestica Chr05 2 CH_mdo_557 2 2 0.000227527
Manihot esculenta Chromosome16 2 CH_mes_414 2 2 0.000366379
Nelumbo nucifera chr7 2 CH_nnu_352 2 4 0.000261597
Petunia axillaris Peaxi162Scf00199 2 CH_pax_232 2 3 0.00021106
Prunus persica Pp04 2 CH_ppe_486 2 3 0.000671324
Populus trichocarpa Chr03 2 CH_ptr_111 4 9 0.000000000364899
Quercus lobata 4 2 CH_qlo_153 6 28 0.0000000000000881382
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_584 2 2 0.000119596
Striga asiatica scaffold175 2 CH_sas_62 2 3 0.0000625371
Salix brachista GWHAAZH00000003 2 CH_sbr_102 3 4 0.000000095296
Sequoiadendron giganteum chr5 2 CH_sgi_1094 2 2 0.000146145
Sapria himalayana scaffold54_3822261 2 CH_shi_133 3 20 0.000111647
Solanum lycopersicum SL4.0ch02 2 CH_sly_328 2 2 0.0000586941
Schrenkiella parvula ch7-4 2 CH_spa_167 2 2 0.000078734
Solanum pennellii Spenn-ch02 2 CH_spe_284 2 2 0.000044479
Solanum tuberosum ST4.03ch02 2 CH_stu_380 2 2 0.0000512453
Trochodendron aralioides group6 2 CH_tar_552 2 2 0.000900549
Theobroma cacao Chromosome_2 2 CH_tca_344 2 2 0.000219716
Tarenaya hassleriana NW_010960187.1 2 CH_tha_141 2 2 0.000209541
Tripterygium wilfordii NC_052247.1 2 CH_twi_284 2 2 0.000557507
Tripterygium wilfordii NC_052252.1 2 CH_twi_285 2 2 0.000557507
Vanilla planifolia CM028150.1 2 CH_vpl_16 4 4 0.00000000000605147
Vitis vinifera chr1 2 CH_vvi_338 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001