Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB03 1 CH_bca_448 3 9 0.00000690641
Camellia sinensis var. sinensis Chr10 1 CH_camsi_725 2 2 0.000275128
Cannabis sativa NC_044373.1 1 CH_cansat_257 3 12 0.000119332
Cardamine hirsuta Chr5 1 CH_chi_358 2 2 0.000414723
Carya illinoinensis Chr10 1 CH_cil_479 2 2 0.000371897
Durio zibethinus NW_019167937.1 1 CH_dzi_327 2 2 0.000463489
Theobroma cacao Chromosome_5 1 CH_tca_343 2 2 0.000219716
Tripterygium wilfordii NC_052234.1 1 CH_twi_246 2 2 0.000334504
Vitis vinifera chr8 1 CH_vvi_80 4 4 0.0000000000462124
Zea mays 1 1 CH_zma_68 3 6 0.0000000784282
Brassica carinata ChrB03 2 CH_bca_448 3 9 0.00000690641
Camellia sinensis var. sinensis Chr10 2 CH_camsi_725 2 2 0.000275128
Cannabis sativa NC_044373.1 2 CH_cansat_257 3 12 0.000119332
Cardamine hirsuta Chr5 2 CH_chi_358 2 2 0.000414723
Carya illinoinensis Chr10 2 CH_cil_479 2 2 0.000371897
Durio zibethinus NW_019167937.1 2 CH_dzi_327 2 2 0.000463489
Theobroma cacao Chromosome_5 2 CH_tca_343 2 2 0.000219716
Tripterygium wilfordii NC_052234.1 2 CH_twi_246 2 2 0.000334504
Vitis vinifera chr8 2 CH_vvi_80 4 4 0.0000000000462124
Zea mays 1 2 CH_zma_68 3 6 0.0000000784282

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001