Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.pectin.xylogalacturonan.biosynthesis.xylogalacturonan xylosyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 1 | CH_acertr_165 | 3 | 3 | 0.00000062622 |
| Acer truncatum | chr8 | 1 | CH_acertr_217 | 3 | 6 | 0.0000125171 |
| Actinidia chinensis | Lachesis_group17 | 1 | CH_ach_264 | 2 | 2 | 0.000814819 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 1 | CH_ama_119 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_692 | 2 | 2 | 0.000628705 |
| Amborella trichopoda | AmTr_v1.0_scaffold00046 | 1 | CH_atr_58 | 4 | 12 | 0.00000000372074 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_203 | 3 | 6 | 0.0000470434 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_24 | 6 | 7 | 5.77443e-16 |
| Capsicum annuum | PGAv.1.6.scaffold541 | 1 | CH_can_273 | 2 | 2 | 0.0000826105 |
| Carica papaya | supercontig_46 | 1 | CH_cpa_385 | 2 | 2 | 0.000950661 |
| Durio zibethinus | NW_019167937.1 | 1 | CH_dzi_101 | 3 | 3 | 0.000000270682 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_176 | 3 | 3 | 0.000000624692 |
| Glycine max | Gm13 | 1 | CH_gma_237 | 3 | 3 | 0.000002094 |
| Glycine max | Gm17 | 1 | CH_gma_44 | 5 | 5 | 0.000000000000181019 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_283 | 3 | 5 | 0.000000783861 |
| Hydrangea macrophylla | Hma1.2p1_0084F.1 | 1 | CH_hma_217 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr13 | 1 | CH_lal_54 | 4 | 6 | 0.000000000455293 |
| Lotus japonicus | chr1 | 1 | CH_lja_166 | 3 | 3 | 0.000000920437 |
| Lotus japonicus | chr4 | 1 | CH_lja_35 | 5 | 5 | 0.0000000000000494273 |
| Malus domestica | Chr02 | 1 | CH_mdo_278 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr04 | 1 | CH_mdo_279 | 3 | 3 | 0.00000176016 |
| Medicago truncatula | chr4 | 1 | CH_mtr_448 | 3 | 7 | 0.0000106297 |
| Nelumbo nucifera | chr8 | 1 | CH_nnu_466 | 2 | 2 | 0.000915631 |
| Physcomitrium patens | Chr22 | 1 | CH_ppa_316 | 2 | 6 | 0.000918977 |
| Prunus persica | Pp07 | 1 | CH_ppe_222 | 3 | 3 | 0.00000137729 |
| Papaver somniferum | NC_039360.1 | 1 | CH_pso_103 | 5 | 7 | 0.00000000000688393 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_117 | 5 | 9 | 0.0000000000412825 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_559 | 4 | 52 | 0.000288457 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_121 | 4 | 5 | 0.0000000014336 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_219 | 3 | 3 | 0.00000110251 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_76 | 4 | 4 | 0.00000000014994 |
| Quercus lobata | CM012294 | 1 | CH_qlo_567 | 3 | 5 | 0.000008793 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_351 | 3 | 4 | 0.00000157316 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_133 | 4 | 8 | 0.00000000394842 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_208 | 3 | 3 | 0.000000349805 |
| Salvia bowleyana | GWHASIU00000006 | 1 | CH_sbo_150 | 3 | 4 | 0.0000001242 |
| Salix brachista | GWHAAZH00000006 | 1 | CH_sbr_115 | 3 | 3 | 0.000000333554 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_1223 | 2 | 2 | 0.000292291 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_169 | 3 | 3 | 0.000000281615 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_109 | 3 | 3 | 0.000000129529 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_420 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024074.1 | 1 | CH_vmu_37 | 4 | 4 | 0.0000000000566556 |
| Vitis vinifera | chr11 | 1 | CH_vvi_140 | 4 | 10 | 0.0000000348968 |
| Acer truncatum | chr7 | 2 | CH_acertr_165 | 3 | 3 | 0.00000062622 |
| Acer truncatum | chr8 | 2 | CH_acertr_217 | 3 | 6 | 0.0000125171 |
| Actinidia chinensis | Lachesis_group17 | 2 | CH_ach_264 | 2 | 2 | 0.000814819 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 2 | CH_ama_119 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_692 | 2 | 2 | 0.000628705 |
| Amborella trichopoda | AmTr_v1.0_scaffold00046 | 2 | CH_atr_58 | 4 | 12 | 0.00000000372074 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_203 | 3 | 6 | 0.0000470434 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_24 | 6 | 7 | 5.77443e-16 |
| Capsicum annuum | PGAv.1.6.scaffold541 | 2 | CH_can_273 | 2 | 2 | 0.0000826105 |
| Carica papaya | supercontig_46 | 2 | CH_cpa_385 | 2 | 2 | 0.000950661 |
| Durio zibethinus | NW_019167937.1 | 2 | CH_dzi_101 | 3 | 3 | 0.000000270682 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_176 | 3 | 3 | 0.000000624692 |
| Glycine max | Gm13 | 2 | CH_gma_237 | 3 | 3 | 0.000002094 |
| Glycine max | Gm17 | 2 | CH_gma_44 | 5 | 5 | 0.000000000000181019 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_283 | 3 | 5 | 0.000000783861 |
| Hydrangea macrophylla | Hma1.2p1_0084F.1 | 2 | CH_hma_217 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr13 | 2 | CH_lal_54 | 4 | 6 | 0.000000000455293 |
| Lotus japonicus | chr1 | 2 | CH_lja_166 | 3 | 3 | 0.000000920437 |
| Lotus japonicus | chr4 | 2 | CH_lja_35 | 5 | 5 | 0.0000000000000494273 |
| Malus domestica | Chr02 | 2 | CH_mdo_278 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr04 | 2 | CH_mdo_279 | 3 | 3 | 0.00000176016 |
| Nelumbo nucifera | chr8 | 2 | CH_nnu_466 | 2 | 2 | 0.000915631 |
| Physcomitrium patens | Chr22 | 2 | CH_ppa_316 | 2 | 6 | 0.000918977 |
| Prunus persica | Pp07 | 2 | CH_ppe_222 | 3 | 3 | 0.00000137729 |
| Papaver somniferum | NC_039360.1 | 2 | CH_pso_103 | 5 | 7 | 0.00000000000688393 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_117 | 5 | 9 | 0.0000000000412825 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_559 | 4 | 52 | 0.000288457 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_121 | 4 | 5 | 0.0000000014336 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_219 | 3 | 3 | 0.00000110251 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_76 | 4 | 4 | 0.00000000014994 |
| Quercus lobata | CM012294 | 2 | CH_qlo_567 | 3 | 5 | 0.000008793 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_351 | 3 | 4 | 0.00000157316 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_133 | 4 | 8 | 0.00000000394842 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_208 | 3 | 3 | 0.000000349805 |
| Salvia bowleyana | GWHASIU00000006 | 2 | CH_sbo_150 | 3 | 4 | 0.0000001242 |
| Salix brachista | GWHAAZH00000006 | 2 | CH_sbr_115 | 3 | 3 | 0.000000333554 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_1223 | 2 | 2 | 0.000292291 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_169 | 3 | 3 | 0.000000281615 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_109 | 3 | 3 | 0.000000129529 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_420 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024074.1 | 2 | CH_vmu_37 | 4 | 4 | 0.0000000000566556 |
| Vitis vinifera | chr11 | 2 | CH_vvi_140 | 4 | 10 | 0.0000000348968 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |