Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.KDO-8-phosphate synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_26 3 3 0.0000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_12 10 15 2.71508e-32
Brassica carinata ChrC08 1 CH_bca_1039 2 3 0.000641272
Durio zibethinus NW_019167860.1 1 CH_dzi_305 2 3 0.000417124
Lonicera japonica GWHAAZE00000007 1 CH_lonja_580 2 3 0.00053896
Punica granatum NC_045132.1 1 CH_pgr_304 2 4 0.00045018
Quercus lobata 4 1 CH_qlo_994 3 63 0.000633404
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_26 3 3 0.0000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_12 10 15 2.71508e-32
Brassica carinata ChrC08 2 CH_bca_1039 2 3 0.000641272
Durio zibethinus NW_019167860.1 2 CH_dzi_305 2 3 0.000417124
Lonicera japonica GWHAAZE00000007 2 CH_lonja_580 2 3 0.00053896
Punica granatum NC_045132.1 2 CH_pgr_304 2 4 0.00045018
Quercus lobata 4 2 CH_qlo_994 3 63 0.000633404

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001