Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (BXL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB08 | 1 | CH_bca_16 | 6 | 8 | 0.00000000000000166911 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 1 | CH_can_82 | 4 | 6 | 0.00000000177549 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_198 | 3 | 3 | 0.00000166552 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_215 | 2 | 2 | 0.000473878 |
| Carica papaya | supercontig_166 | 1 | CH_cpa_78 | 3 | 3 | 0.000000474494 |
| Davidia involucrata | GWHABJS00000002 | 1 | CH_din_194 | 3 | 6 | 0.00000630071 |
| Eucalyptus grandis | Chr07 | 1 | CH_egr_128 | 6 | 6 | 7.73591e-17 |
| Erythranthe guttata | scaffold_3 | 1 | CH_egut_27 | 7 | 8 | 7.27961e-18 |
| Erythranthe guttata | scaffold_3 | 1 | CH_egut_76 | 5 | 7 | 0.000000000068591 |
| Malus domestica | Chr05 | 1 | CH_mdo_520 | 3 | 12 | 0.000172465 |
| Manihot esculenta | Chromosome18 | 1 | CH_mes_229 | 3 | 3 | 0.00000313221 |
| Manihot esculenta | Chromosome02 | 1 | CH_mes_432 | 3 | 10 | 0.000375002 |
| Medicago truncatula | chr5 | 1 | CH_mtr_243 | 4 | 9 | 0.0000000129684 |
| Nicotiana tabacum | Nitab4.5_0000469 | 1 | CH_nta_38 | 3 | 3 | 0.000000180611 |
| Olea europaea | chr7 | 1 | CH_oeu_87 | 3 | 3 | 0.000000705222 |
| Petunia axillaris | Peaxi162Scf00041 | 1 | CH_pax_7 | 7 | 8 | 2.62302e-19 |
| Quercus lobata | 3 | 1 | CH_qlo_16 | 12 | 23 | 6.44973e-31 |
| Quercus lobata | 5 | 1 | CH_qlo_702 | 3 | 5 | 0.0000531391 |
| Rhododendron simsii | chr07 | 1 | CH_rsi_577 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold67 | 1 | CH_sas_34 | 3 | 6 | 0.00000656758 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_204 | 3 | 3 | 0.00000211152 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_304 | 3 | 7 | 0.0000738257 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_316 | 3 | 8 | 0.00011809 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_334 | 4 | 5 | 0.000000000364144 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_175 | 3 | 3 | 0.000000289388 |
| Selaginella moellendorffii | scaffold_43 | 1 | CH_smo_146 | 2 | 2 | 0.000560224 |
| Solanum pennellii | Spenn-ch04 | 1 | CH_spe_156 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch04 | 1 | CH_stu_103 | 4 | 6 | 0.000000000423849 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_208 | 4 | 14 | 0.00000160471 |
| Theobroma cacao | Chromosome_8 | 1 | CH_tca_222 | 3 | 3 | 0.00000366099 |
| Theobroma cacao | Chromosome_10 | 1 | CH_tca_255 | 3 | 5 | 0.0000365831 |
| Vitis vinifera | chr5 | 1 | CH_vvi_125 | 4 | 5 | 0.0000000157054 |
| Brassica carinata | ChrB08 | 2 | CH_bca_16 | 6 | 8 | 0.00000000000000166911 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 2 | CH_can_82 | 4 | 6 | 0.00000000177549 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_198 | 3 | 3 | 0.00000166552 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_215 | 2 | 2 | 0.000473878 |
| Carica papaya | supercontig_166 | 2 | CH_cpa_78 | 3 | 3 | 0.000000474494 |
| Davidia involucrata | GWHABJS00000002 | 2 | CH_din_194 | 3 | 6 | 0.00000630071 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_128 | 6 | 6 | 7.73591e-17 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_539 | 3 | 3 | 0.00000233795 |
| Erythranthe guttata | scaffold_3 | 2 | CH_egut_27 | 7 | 8 | 7.27961e-18 |
| Erythranthe guttata | scaffold_3 | 2 | CH_egut_76 | 5 | 7 | 0.000000000068591 |
| Malus domestica | Chr05 | 2 | CH_mdo_520 | 3 | 12 | 0.000172465 |
| Manihot esculenta | Chromosome18 | 2 | CH_mes_229 | 3 | 3 | 0.00000313221 |
| Manihot esculenta | Chromosome02 | 2 | CH_mes_432 | 3 | 10 | 0.000375002 |
| Nicotiana tabacum | Nitab4.5_0000469 | 2 | CH_nta_38 | 3 | 3 | 0.000000180611 |
| Olea europaea | chr7 | 2 | CH_oeu_87 | 3 | 3 | 0.000000705222 |
| Petunia axillaris | Peaxi162Scf00041 | 2 | CH_pax_7 | 7 | 8 | 2.62302e-19 |
| Quercus lobata | 3 | 2 | CH_qlo_16 | 12 | 23 | 6.44973e-31 |
| Quercus lobata | 5 | 2 | CH_qlo_702 | 3 | 5 | 0.0000531391 |
| Rhododendron simsii | chr07 | 2 | CH_rsi_577 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold67 | 2 | CH_sas_34 | 3 | 6 | 0.00000656758 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_204 | 3 | 3 | 0.00000211152 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_304 | 3 | 7 | 0.0000738257 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_316 | 3 | 8 | 0.00011809 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_334 | 4 | 5 | 0.000000000364144 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_175 | 3 | 3 | 0.000000289388 |
| Selaginella moellendorffii | scaffold_43 | 2 | CH_smo_146 | 2 | 2 | 0.000560224 |
| Solanum pennellii | Spenn-ch04 | 2 | CH_spe_156 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch04 | 2 | CH_stu_103 | 4 | 6 | 0.000000000423849 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_208 | 4 | 14 | 0.00000160471 |
| Theobroma cacao | Chromosome_8 | 2 | CH_tca_222 | 3 | 3 | 0.00000366099 |
| Theobroma cacao | Chromosome_10 | 2 | CH_tca_255 | 3 | 5 | 0.0000365831 |
| Vitis vinifera | chr5 | 2 | CH_vvi_125 | 4 | 5 | 0.0000000157054 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |