Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_19 6 11 0.00000000171715
Fragaria x ananassa Fvb1-1 1 CH_fan_446 8 71 0.000202881
Glycine max Gm01 1 CH_gma_530 4 5 0.000420643
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_364 5 14 0.000120047
Physcomitrium patens Chr03 1 CH_ppa_69 5 15 0.0000270996
Solanum tuberosum ST4.03ch03 1 CH_stu_415 5 14 0.000111841
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_19 6 11 0.00000000171715
Fragaria x ananassa Fvb1-1 2 CH_fan_446 8 71 0.000202881
Glycine max Gm01 2 CH_gma_530 4 5 0.000420643
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_364 5 14 0.000120047
Physcomitrium patens Chr03 2 CH_ppa_69 5 15 0.0000270996
Solanum tuberosum ST4.03ch03 2 CH_stu_415 5 14 0.000111841

Available child term results

Ontology identifier Description Number of clusters
21.3.1 Cell wall organisation.pectin.homogalacturonan 2
21.3.1.1.1.1 Cell wall organisation.pectin.homogalacturonan.biosynthesis.GAUT1:GAUT7 galacturonosyltransferase heterodimer.component GAUT1 2
21.3.1.1.1.2 Cell wall organisation.pectin.homogalacturonan.biosynthesis.GAUT1:GAUT7 galacturonosyltransferase heterodimer.component GAUT7 2
21.3.1.1.2 Cell wall organisation.pectin.homogalacturonan.biosynthesis.methyltransferase (QUA) 2
21.3.1.1.3 Cell wall organisation.pectin.homogalacturonan.biosynthesis.methyltransferase (CGR) 12
21.3.1.2 Cell wall organisation.pectin.homogalacturonan.modification and degradation 2
21.3.1.2.1 Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase 532
21.3.1.2.2 Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase inhibitor 25
21.3.2.1.1 Cell wall organisation.pectin.rhamnogalacturonan I.biosynthesis.rhamnosyltransferase 12
21.3.2.1.2 Cell wall organisation.pectin.rhamnogalacturonan I.biosynthesis.1,5-alpha-arabinosyltransferase 7
21.3.2.1.3 Cell wall organisation.pectin.rhamnogalacturonan I.biosynthesis.beta-1,4-galactosyltransferase 14
21.3.2.2.1 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.rhamnogalacturonan-I galactose oxidase (RUBY) 76
21.3.2.2.2 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.rhamnogalacturonan-I O-acetyltransferase (TBL) 6
21.3.2.2.3 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase (BGAL) 17
21.3.2.2.4 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities 1
21.3.2.2.4.1 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (ASD) 51
21.3.2.2.4.2 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (BXL) 64
21.3.2.2.5 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.glycosyltransferase (MUCI70) 2
21.3.3.1.1 Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.1,3-alpha-D-xylosyltransferase 11
21.3.3.1.2.1 Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.D-arabinose-5-phosphate isomerase 6
21.3.3.1.2.2 Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.KDO-8-phosphate synthase 14
21.3.3.1.2.3 Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) biosynthesis.CMP-KDO synthetase 4
21.3.4.1.1 Cell wall organisation.pectin.xylogalacturonan.biosynthesis.xylogalacturonan xylosyltransferase 85
21.3.5 Cell wall organisation.pectin.modification and degradation 2
21.3.5.1 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities 2
21.3.5.1.1 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT2) 20
21.3.5.1.2 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT3) 104
21.3.5.1.3 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (PGX1) 2
21.3.5.1.4 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.non-catalytic polygalacturonase regulator 55
21.3.5.2 Cell wall organisation.pectin.modification and degradation.pectate lyase 60
21.3.5.3 Cell wall organisation.pectin.modification and degradation.pectin lyase 10
21.3.5.4 Cell wall organisation.pectin.modification and degradation.pectin acetylesterase 60

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001