Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_231 | 3 | 3 | 0.000000112936 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_232 | 3 | 3 | 0.000000112936 |
| Camellia sinensis var. sinensis | Chr10 | 1 | CH_camsi_769 | 2 | 3 | 0.000412677 |
| Lotus japonicus | chr2 | 1 | CH_lja_112 | 3 | 3 | 0.0000000767031 |
| Manihot esculenta | Chromosome06 | 1 | CH_mes_357 | 2 | 2 | 0.000183189 |
| Marchantia polymorpha | scaffold_8 | 1 | CH_mpo_74 | 2 | 2 | 0.000110442 |
| Medicago truncatula | chr1 | 1 | CH_mtr_608 | 2 | 2 | 0.000123259 |
| Nelumbo nucifera | chr3 | 1 | CH_nnu_320 | 2 | 2 | 0.000130804 |
| Quercus lobata | 4 | 1 | CH_qlo_662 | 2 | 2 | 0.0000516289 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_291 | 5 | 11 | 0.0000000000390254 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_85 | 7 | 7 | 3.6136e-21 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_227 | 2 | 2 | 0.0000756974 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_231 | 3 | 3 | 0.000000112936 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_232 | 3 | 3 | 0.000000112936 |
| Camellia sinensis var. sinensis | Chr10 | 2 | CH_camsi_769 | 2 | 3 | 0.000412677 |
| Lotus japonicus | chr2 | 2 | CH_lja_112 | 3 | 3 | 0.0000000767031 |
| Manihot esculenta | Chromosome06 | 2 | CH_mes_357 | 2 | 2 | 0.000183189 |
| Marchantia polymorpha | scaffold_8 | 2 | CH_mpo_74 | 2 | 2 | 0.000110442 |
| Nelumbo nucifera | chr3 | 2 | CH_nnu_320 | 2 | 2 | 0.000130804 |
| Quercus lobata | 4 | 2 | CH_qlo_662 | 2 | 2 | 0.0000516289 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_291 | 5 | 11 | 0.0000000000390254 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_85 | 7 | 7 | 3.6136e-21 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_227 | 2 | 2 | 0.0000756974 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |