Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.hemicellulose.xyloglucan.biosynthesis.1,2-alpha-fucosyltransferase (FUT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group9 | 1 | CH_ach_1 | 6 | 8 | 2.08623e-18 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_167 | 3 | 4 | 0.00000146363 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 1 | CH_amhyb_262 | 2 | 2 | 0.000841751 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_162 | 3 | 5 | 0.00000103403 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_324 | 3 | 23 | 0.000182867 |
| Brassica carinata | ChrC05 | 1 | CH_bca_138 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrC06 | 1 | CH_bca_139 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrC07 | 1 | CH_bca_172 | 4 | 5 | 0.00000000967438 |
| Brassica carinata | ChrB03 | 1 | CH_bca_39 | 5 | 5 | 0.000000000000682674 |
| Brassica carinata | ChrB08 | 1 | CH_bca_434 | 3 | 3 | 0.00000532583 |
| Brassica carinata | ChrC07 | 1 | CH_bca_52 | 5 | 6 | 0.00000000000409483 |
| Brassica napus | A08 | 1 | CH_bna_109 | 4 | 4 | 0.00000000126506 |
| Brassica napus | A09 | 1 | CH_bna_110 | 4 | 4 | 0.00000000126506 |
| Brassica napus | C05 | 1 | CH_bna_111 | 4 | 4 | 0.00000000126506 |
| Brassica napus | C08 | 1 | CH_bna_112 | 4 | 4 | 0.00000000126506 |
| Brassica napus | C08 | 1 | CH_bna_113 | 4 | 4 | 0.00000000126506 |
| Brassica napus | A06 | 1 | CH_bna_14 | 6 | 6 | 1.14948e-16 |
| Brassica oleracea | C8 | 1 | CH_bol_143 | 3 | 3 | 0.00000108977 |
| Brassica oleracea | C8 | 1 | CH_bol_32 | 5 | 8 | 0.00000000000296526 |
| Brassica oleracea | C5 | 1 | CH_bol_75 | 4 | 7 | 0.0000000087224 |
| Brassica rapa | A09 | 1 | CH_bra_163 | 3 | 4 | 0.000010713 |
| Brassica rapa | A06 | 1 | CH_bra_64 | 4 | 5 | 0.00000000459945 |
| Brassica rapa | A08 | 1 | CH_bra_7 | 7 | 7 | 2.48522e-20 |
| Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_822 | 2 | 2 | 0.000458547 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_267 | 2 | 2 | 0.000466981 |
| Chara braunii | BFEA01000370 | 1 | CH_cbr_47 | 3 | 11 | 0.0000127956 |
| Coffea canephora | chr4 | 1 | CH_ccan_339 | 2 | 6 | 0.00063882 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_61 | 4 | 4 | 0.0000000000248428 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_226 | 2 | 2 | 0.000473878 |
| Cardamine hirsuta | Chr3 | 1 | CH_chi_192 | 3 | 5 | 0.0000204847 |
| Cardamine hirsuta | Chr1 | 1 | CH_chi_83 | 4 | 5 | 0.0000000035411 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_66 | 4 | 4 | 0.000000000147763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_66 | 4 | 9 | 0.00000000017074 |
| Eutrema salsugineum | scaffold_5 | 1 | CH_esa_7 | 7 | 7 | 1.21685e-20 |
| Lotus japonicus | chr3 | 1 | CH_lja_49 | 4 | 4 | 0.0000000000164558 |
| Lonicera japonica | GWHAAZE00000005 | 1 | CH_lonja_461 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr16 | 1 | CH_mdo_176 | 3 | 3 | 0.0000000215706 |
| Medicago truncatula | chr4 | 1 | CH_mtr_411 | 3 | 7 | 0.00000496114 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_363 | 2 | 2 | 0.000261609 |
| Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_36 | 5 | 7 | 0.0000000000104929 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_8 | 7 | 7 | 5.43983e-20 |
| Petunia axillaris | Peaxi162Scf00069 | 1 | CH_pax_349 | 2 | 2 | 0.000703556 |
| Petunia axillaris | Peaxi162Scf00106 | 1 | CH_pax_350 | 2 | 2 | 0.000703556 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_401 | 2 | 2 | 0.000782452 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_87 | 4 | 4 | 0.0000000000202774 |
| Phaseolus vulgaris | Chr10 | 1 | CH_pvu_140 | 3 | 3 | 0.000000161953 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_726 | 2 | 2 | 0.000398653 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_727 | 2 | 2 | 0.000398653 |
| Salix brachista | GWHAAZH00000003 | 1 | CH_sbr_51 | 4 | 4 | 0.0000000000262749 |
| Schrenkiella parvula | ch1-1 | 1 | CH_spa_46 | 4 | 4 | 0.000000000102508 |
| Tarenaya hassleriana | NW_010961290.1 | 1 | CH_tha_140 | 2 | 2 | 0.000209541 |
| Utricularia gibba | unitig_21 | 1 | CH_ugi_5 | 9 | 59 | 0.00000000000000147278 |
| Vigna mungo | CM024079.1 | 1 | CH_vmu_86 | 3 | 3 | 0.0000000626267 |
| Zea mays | 9 | 1 | CH_zma_47 | 6 | 41 | 0.00000000260427 |
| Actinidia chinensis | Lachesis_group9 | 2 | CH_ach_1 | 6 | 8 | 2.08623e-18 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_167 | 3 | 4 | 0.00000146363 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 2 | CH_amhyb_262 | 2 | 2 | 0.000841751 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_162 | 3 | 5 | 0.00000103403 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_324 | 3 | 23 | 0.000182867 |
| Brassica carinata | ChrC05 | 2 | CH_bca_138 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrC06 | 2 | CH_bca_139 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrC07 | 2 | CH_bca_172 | 4 | 5 | 0.00000000967438 |
| Brassica carinata | ChrB03 | 2 | CH_bca_39 | 5 | 5 | 0.000000000000682674 |
| Brassica carinata | ChrB08 | 2 | CH_bca_434 | 3 | 3 | 0.00000532583 |
| Brassica carinata | ChrC07 | 2 | CH_bca_52 | 5 | 6 | 0.00000000000409483 |
| Brassica oleracea | C8 | 2 | CH_bol_143 | 3 | 3 | 0.00000108977 |
| Brassica oleracea | C8 | 2 | CH_bol_32 | 5 | 8 | 0.00000000000296526 |
| Brassica oleracea | C5 | 2 | CH_bol_75 | 4 | 7 | 0.0000000087224 |
| Brassica rapa | A09 | 2 | CH_bra_163 | 3 | 4 | 0.000010713 |
| Brassica rapa | A06 | 2 | CH_bra_64 | 4 | 5 | 0.00000000459945 |
| Brassica rapa | A08 | 2 | CH_bra_7 | 7 | 7 | 2.48522e-20 |
| Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_822 | 2 | 2 | 0.000458547 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_267 | 2 | 2 | 0.000466981 |
| Chara braunii | BFEA01000370 | 2 | CH_cbr_47 | 3 | 11 | 0.0000127956 |
| Coffea canephora | chr4 | 2 | CH_ccan_339 | 2 | 6 | 0.00063882 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_61 | 4 | 4 | 0.0000000000248428 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_226 | 2 | 2 | 0.000473878 |
| Cardamine hirsuta | Chr3 | 2 | CH_chi_192 | 3 | 5 | 0.0000204847 |
| Cardamine hirsuta | Chr1 | 2 | CH_chi_83 | 4 | 5 | 0.0000000035411 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_66 | 4 | 4 | 0.000000000147763 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_66 | 4 | 9 | 0.00000000017074 |
| Eutrema salsugineum | scaffold_5 | 2 | CH_esa_7 | 7 | 7 | 1.21685e-20 |
| Lotus japonicus | chr3 | 2 | CH_lja_49 | 4 | 4 | 0.0000000000164558 |
| Lonicera japonica | GWHAAZE00000005 | 2 | CH_lonja_461 | 2 | 2 | 0.000179662 |
| Malus domestica | Chr16 | 2 | CH_mdo_176 | 3 | 3 | 0.0000000215706 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_363 | 2 | 2 | 0.000261609 |
| Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_36 | 5 | 7 | 0.0000000000104929 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_8 | 7 | 7 | 5.43983e-20 |
| Petunia axillaris | Peaxi162Scf00069 | 2 | CH_pax_349 | 2 | 2 | 0.000703556 |
| Petunia axillaris | Peaxi162Scf00106 | 2 | CH_pax_350 | 2 | 2 | 0.000703556 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_401 | 2 | 2 | 0.000782452 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_87 | 4 | 4 | 0.0000000000202774 |
| Phaseolus vulgaris | Chr10 | 2 | CH_pvu_140 | 3 | 3 | 0.000000161953 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_726 | 2 | 2 | 0.000398653 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_727 | 2 | 2 | 0.000398653 |
| Salix brachista | GWHAAZH00000003 | 2 | CH_sbr_51 | 4 | 4 | 0.0000000000262749 |
| Schrenkiella parvula | ch1-1 | 2 | CH_spa_46 | 4 | 4 | 0.000000000102508 |
| Tarenaya hassleriana | NW_010961290.1 | 2 | CH_tha_140 | 2 | 2 | 0.000209541 |
| Utricularia gibba | unitig_21 | 2 | CH_ugi_5 | 9 | 59 | 0.00000000000000147278 |
| Vigna mungo | CM024079.1 | 2 | CH_vmu_86 | 3 | 3 | 0.0000000626267 |
| Zea mays | 9 | 2 | CH_zma_47 | 6 | 41 | 0.00000000260427 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |