Functional clusters

Information

  • Type MapMan
  • Description Cellular respiration

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Gossypium raimondii Chr01 1 CH_gra_94 13 79 0.00000000328208
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_372 5 7 0.00000240805
Gossypium raimondii Chr01 2 CH_gra_94 13 79 0.00000000328208
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_372 5 7 0.00000240805

Available child term results

Ontology identifier Description Number of clusters
2.1.1.1.1 Cellular respiration.glycolysis.cytosolic glycolysis.phosphofructokinase activities.ATP-dependent phosphofructokinase 8
2.1.1.1.2 Cellular respiration.glycolysis.cytosolic glycolysis.phosphofructokinase activities.pyrophosphate-dependent phosphofructokinase 14
2.1.1.2 Cellular respiration.glycolysis.cytosolic glycolysis.fructose-bisphosphate aldolase (FBA) 21
2.1.1.3 Cellular respiration.glycolysis.cytosolic glycolysis.triose-phosphate isomerase 3
2.1.1.4.1 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NAD-dependent glyceraldehyde 3-phosphate dehydrogenase 10
2.1.1.4.2 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase 6
2.1.1.5 Cellular respiration.glycolysis.cytosolic glycolysis.phosphoglycerate kinase 3
2.1.1.6 Cellular respiration.glycolysis.cytosolic glycolysis.phosphoglycerate mutase 30
2.1.1.7 Cellular respiration.glycolysis.cytosolic glycolysis.enolase 2
2.1.1.8 Cellular respiration.glycolysis.cytosolic glycolysis.pyruvate kinase 13
2.1.2.1 Cellular respiration.glycolysis.methylglyoxal degradation.lactoyl-glutathione lyase (GLX1) 31
2.1.2.2 Cellular respiration.glycolysis.methylglyoxal degradation.hydroxy-acyl-glutathione hydrolase (GLX2) 4
2.1.2.3 Cellular respiration.glycolysis.methylglyoxal degradation.glutathione-independent glyoxalase (GLY-III) 26
2.1.2.4 Cellular respiration.glycolysis.methylglyoxal degradation.D-lactate dehydrogenase 8
2.2.1.1.2 Cellular respiration.pyruvate oxidation.mitochondrial pyruvate dehydrogenase complex.component E1 heterodimer.subunit beta 10
2.2.1.4.1 Cellular respiration.pyruvate oxidation.mitochondrial pyruvate dehydrogenase complex.regulation.pyruvate dehydrogenase kinase 2
2.3 Cellular respiration.tricarboxylic acid cycle 2
2.3.1 Cellular respiration.tricarboxylic acid cycle.citrate synthase 6
2.3.3.1 Cellular respiration.tricarboxylic acid cycle.isocitrate dehydrogenase heterodimer.catalytic component 8
2.3.3.2 Cellular respiration.tricarboxylic acid cycle.isocitrate dehydrogenase heterodimer.regulatory component 2
2.3.4.1 Cellular respiration.tricarboxylic acid cycle.2-oxoglutarate dehydrogenase complex.component E1 30
2.3.4.2 Cellular respiration.tricarboxylic acid cycle.2-oxoglutarate dehydrogenase complex.component E2 4
2.3.4.3 Cellular respiration.tricarboxylic acid cycle.2-oxoglutarate dehydrogenase complex.dihydrolipoamide dehydrogenase component E3 4
2.3.5.1 Cellular respiration.tricarboxylic acid cycle.succinyl-CoA ligase heterodimer.subunit alpha 2
2.3.5.2 Cellular respiration.tricarboxylic acid cycle.succinyl-CoA ligase heterodimer.subunit beta 10
2.3.6.1.1 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.flavoprotein component SDH1 10
2.3.6.1.2 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.iron-sulphur component SDH2 10
2.3.6.1.3 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.membrane-anchor component SDH3 2
2.3.6.1.4 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.membrane-anchor component SDH4 4
2.3.6.1.5 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.component SDH5 4
2.3.6.1.6 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.component SDH6 4
2.3.6.1.7 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.component SDH7 2
2.3.6.1.8 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.components.component SDH8 4
2.3.6.2.2 Cellular respiration.tricarboxylic acid cycle.succinate dehydrogenase complex.assembly.assembly factor (SDHAF4) 2
2.3.7 Cellular respiration.tricarboxylic acid cycle.fumarase 21
2.3.8 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malate dehydrogenase 4
2.3.9 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme 2
2.4 Cellular respiration.oxidative phosphorylation 76
2.4.1.1.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO1 2
2.4.1.1.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO2 4
2.4.1.1.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module N (electron input).component NQO3 8
2.4.1.2.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module Q (electron output).component NQO5 2
2.4.1.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation) 2
2.4.1.3.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND4L/NQO11 2
2.4.1.3.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND5/NQO12 2
2.4.1.3.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.module P (proton translocation).component ND6/NQO10 2
2.4.1.4.1.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA1 8
2.4.1.4.1.10 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA13 6
2.4.1.4.1.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA2 6
2.4.1.4.1.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA5 11
2.4.1.4.1.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA6 11
2.4.1.4.1.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA7 6
2.4.1.4.1.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA8 4
2.4.1.4.1.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA9 2
2.4.1.4.1.9 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.alpha subcomplex.component NDUFA12 4
2.4.1.4.10 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.carbonic anhydrase component (gamma-CA) 10
2.4.1.4.2.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB1 2
2.4.1.4.2.2 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB2 2
2.4.1.4.2.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB4 8
2.4.1.4.2.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB7 10
2.4.1.4.2.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB8 6
2.4.1.4.2.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB9 2
2.4.1.4.2.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB10 2
2.4.1.4.2.9 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB11 4
2.4.1.4.3 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS4 4
2.4.1.4.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS5 2
2.4.1.4.5 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NduFS6 2
2.4.1.4.6 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NDUFC1 2
2.4.1.4.7 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component NDUFC2 8
2.4.1.4.8 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.component P1 8
2.4.1.5.1 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.assembly.assembly factor (CIAF1) 5
2.4.2.1.1 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDA) 5
2.4.2.1.2 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDB) 65
2.4.2.1.3 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDC) 8
2.4.2.2 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.alternative oxidase (AOx) 73
2.4.2.3 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.mitochondrial uncoupling protein (PUMP) 4
2.4.3 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex 2
2.4.3.2 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component cytochrome c1 10
2.4.3.4 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.Rieske iron-sulphur component UCR1 44
2.4.3.5 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR6 12
2.4.3.6 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR7 6
2.4.3.7 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR8 2
2.4.3.8 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR9 8
2.4.3.9 Cellular respiration.oxidative phosphorylation.cytochrome c reductase complex.component QCR10 4
2.4.4.1 Cellular respiration.oxidative phosphorylation.cytochrome c.cytochrome c protein 17
2.4.4.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I) 8
2.4.4.2.1.1 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).CcmABC complex.ATP-binding component CcmA 14
2.4.4.2.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).heme chaperone (CcmE) 4
2.4.4.2.3 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex 2
2.4.4.2.3.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex.component CcmFn 4
2.4.4.2.3.3 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I).apocytochrome-heme assembly complex.component CcmH 4
2.4.5.1.2 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX2 2
2.4.5.1.4 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX5b 26
2.4.5.1.5 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX5c 2
2.4.5.1.6 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX6a 2
2.4.5.1.7 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.core components.component COX6b 8
2.4.5.2.3 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX15 8
2.4.5.2.4 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX16 5
2.4.5.2.5 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX17 4
2.4.5.2.6 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.membrane insertase component COX18/Oxa1 15
2.4.5.2.7 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component COX19 4
2.4.5.2.8 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.component SURF1 11
2.4.5.2.9 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.accessory assembly components.metallochaperone component HCC/SCO1 5
2.4.6.1 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex 4
2.4.6.1.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit b 2
2.4.6.1.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit c 6
2.4.6.1.4 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit d 14
2.4.6.1.5 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit g 12
2.4.6.1.7 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit ATP6 10
2.4.6.2.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit beta 43
2.4.6.2.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit gamma 8
2.4.6.2.4 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit delta/OSCP 4
2.4.6.2.5 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit delta_ 16
2.4.6.2.6 Cellular respiration.oxidative phosphorylation.ATP synthase complex.peripheral MF1 subcomplex.subunit epsilon 2
2.4.6.3.1 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP10) 8
2.4.6.3.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP11) 2
2.4.6.3.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.assembly.chaperone (ATP12) 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001