Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.proteolysis.threonine-type peptidase activities.T3-class gamma-glutamyl transpeptidase (GGT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_158 2 4 0.000481502
Arabidopsis lyrata scaffold_7 1 CH_aly_371 2 2 0.000396027
Arabidopsis thaliana Chr4 1 CH_ath_386 2 3 0.000515668
Amborella trichopoda AmTr_v1.0_scaffold00002 1 CH_atr_15 7 7 6.30266e-19
Amborella trichopoda AmTr_v1.0_scaffold00056 1 CH_atr_37 5 5 0.00000000000255987
Brassica carinata Contig281 1 CH_bca_664 3 15 0.0000890984
Brassica napus C07 1 CH_bna_100 4 5 0.000000000847937
Brassica napus C07 1 CH_bna_269 3 3 0.000000914265
Brassica oleracea C7 1 CH_bol_48 4 5 0.0000000003745
Brassica rapa A09 1 CH_bra_124 3 4 0.00000132688
Capsicum annuum PGAv.1.6.scaffold786 1 CH_can_287 2 2 0.0000826105
Citrus clementina scaffold_1 1 CH_ccl_402 2 2 0.000246093
Cardamine hirsuta Chr7 1 CH_chi_60 4 4 0.000000000014862
Carica papaya supercontig_78 1 CH_cpa_283 2 3 0.000285185
Capsella rubella scaffold_7 1 CH_cru_333 2 2 0.000219346
Erythranthe guttata scaffold_9 1 CH_egut_41 5 5 0.0000000000000265706
Gossypium raimondii Chr03 1 CH_gra_362 2 2 0.000321664
Lupinus albus Lalb_Chr14 1 CH_lal_313 2 2 0.000314895
Lonicera japonica GWHAAZE00000004 1 CH_lonja_484 2 2 0.000179662
Malus domestica Chr10 1 CH_mdo_145 4 9 0.00000000259613
Oryza sativa ssp. japonica chr01 1 CH_osa_275 2 2 0.000158437
Papaver somniferum NC_039359.1 1 CH_pso_544 2 2 0.000225233
Quercus lobata 6 1 CH_qlo_414 3 5 0.000000159922
Sechium edule LG03 1 CH_sed_304 2 2 0.000428052
Sechium edule LG10 1 CH_sed_305 2 2 0.000428052
Schrenkiella parvula ch7-6 1 CH_spa_299 2 2 0.00078734
Schrenkiella parvula ch7-5 1 CH_spa_90 3 3 0.0000000929892
Selenicereus undatus Scaffold_33676 1 CH_sun_248 2 2 0.000435983
Selenicereus undatus Scaffold_2055 1 CH_sun_249 2 2 0.000435983
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_158 2 4 0.000481502
Arabidopsis lyrata scaffold_7 2 CH_aly_371 2 2 0.000396027
Arabidopsis thaliana Chr4 2 CH_ath_386 2 3 0.000515668
Amborella trichopoda AmTr_v1.0_scaffold00002 2 CH_atr_15 7 7 6.30266e-19
Amborella trichopoda AmTr_v1.0_scaffold00056 2 CH_atr_37 5 5 0.00000000000255987
Brassica carinata Contig281 2 CH_bca_664 3 15 0.0000890984
Brassica oleracea C7 2 CH_bol_48 4 5 0.0000000003745
Brassica rapa A09 2 CH_bra_124 3 4 0.00000132688
Capsicum annuum PGAv.1.6.scaffold786 2 CH_can_287 2 2 0.0000826105
Citrus clementina scaffold_1 2 CH_ccl_402 2 2 0.000246093
Cardamine hirsuta Chr7 2 CH_chi_60 4 4 0.000000000014862
Carica papaya supercontig_78 2 CH_cpa_283 2 3 0.000285185
Capsella rubella scaffold_7 2 CH_cru_333 2 2 0.000219346
Eucalyptus grandis Chr03 2 CH_egr_932 2 6 0.000877809
Erythranthe guttata scaffold_9 2 CH_egut_41 5 5 0.0000000000000265706
Gossypium hirsutum D03 2 CH_ghi_787 2 2 0.000560733
Gossypium raimondii Chr03 2 CH_gra_362 2 2 0.000321664
Lupinus albus Lalb_Chr14 2 CH_lal_313 2 2 0.000314895
Lonicera japonica GWHAAZE00000004 2 CH_lonja_484 2 2 0.000179662
Malus domestica Chr10 2 CH_mdo_145 4 9 0.00000000259613
Oryza sativa ssp. japonica chr01 2 CH_osa_275 2 2 0.000158437
Papaver somniferum NC_039359.1 2 CH_pso_544 2 2 0.000225233
Quercus lobata 6 2 CH_qlo_414 3 5 0.000000159922
Sechium edule LG03 2 CH_sed_304 2 2 0.000428052
Sechium edule LG10 2 CH_sed_305 2 2 0.000428052
Schrenkiella parvula ch7-6 2 CH_spa_299 2 2 0.00078734
Schrenkiella parvula ch7-5 2 CH_spa_90 3 3 0.0000000929892
Selenicereus undatus Scaffold_33676 2 CH_sun_248 2 2 0.000435983
Selenicereus undatus Scaffold_2055 2 CH_sun_249 2 2 0.000435983

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001