Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.serine-type peptidase activities.S1-class protease (Deg)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 1 | CH_acertr_576 | 3 | 15 | 0.000966637 |
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_70 | 4 | 4 | 0.00000000205334 |
| Brassica oleracea | C4 | 1 | CH_bol_173 | 3 | 4 | 0.00000522985 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_118 | 3 | 3 | 0.00000169655 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_183 | 4 | 6 | 0.0000000021471 |
| Cardamine hirsuta | Chr2 | 1 | CH_chi_203 | 3 | 5 | 0.0000486948 |
| Cardamine hirsuta | Chr8 | 1 | CH_chi_80 | 4 | 4 | 0.0000000023581 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 1 | CH_cqu_107 | 4 | 4 | 0.00000000282608 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 1 | CH_cqu_259 | 3 | 3 | 0.00000596416 |
| Eutrema salsugineum | scaffold_9 | 1 | CH_esa_57 | 4 | 4 | 0.00000000180847 |
| Gossypium hirsutum | A07 | 1 | CH_ghi_357 | 3 | 3 | 0.00000245979 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_296 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_70 | 5 | 9 | 0.000000000010518 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_423 | 4 | 37 | 0.0000615434 |
| Quercus lobata | 5 | 1 | CH_qlo_518 | 3 | 3 | 0.00000181928 |
| Rhododendron simsii | chr13 | 1 | CH_rsi_71 | 8 | 54 | 0.00000000000233475 |
| Tripterygium wilfordii | NC_052243.1 | 1 | CH_twi_34 | 5 | 6 | 0.00000000000268969 |
| Acer truncatum | chr10 | 2 | CH_acertr_576 | 3 | 15 | 0.000966637 |
| Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_70 | 4 | 4 | 0.00000000205334 |
| Brassica oleracea | C4 | 2 | CH_bol_173 | 3 | 4 | 0.00000522985 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_118 | 3 | 3 | 0.00000169655 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_183 | 4 | 6 | 0.0000000021471 |
| Cardamine hirsuta | Chr2 | 2 | CH_chi_203 | 3 | 5 | 0.0000486948 |
| Cardamine hirsuta | Chr8 | 2 | CH_chi_80 | 4 | 4 | 0.0000000023581 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 2 | CH_cqu_107 | 4 | 4 | 0.00000000282608 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 2 | CH_cqu_259 | 3 | 3 | 0.00000596416 |
| Eucalyptus grandis | Chr09 | 2 | CH_egr_547 | 5 | 69 | 0.00000291905 |
| Eutrema salsugineum | scaffold_9 | 2 | CH_esa_57 | 4 | 4 | 0.00000000180847 |
| Gossypium hirsutum | A07 | 2 | CH_ghi_357 | 3 | 3 | 0.00000245979 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_296 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_70 | 5 | 9 | 0.000000000010518 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_423 | 4 | 37 | 0.0000615434 |
| Quercus lobata | 5 | 2 | CH_qlo_518 | 3 | 3 | 0.00000181928 |
| Rhododendron simsii | chr13 | 2 | CH_rsi_71 | 8 | 54 | 0.00000000000233475 |
| Tripterygium wilfordii | NC_052243.1 | 2 | CH_twi_34 | 5 | 6 | 0.00000000000268969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |