Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 1 | CH_aar_182 | 3 | 10 | 0.000246663 |
| Aethionema arabicum | LG-6 | 1 | CH_aar_94 | 3 | 3 | 0.00000206013 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_147 | 5 | 42 | 0.000000739456 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_69 | 4 | 4 | 0.00000000205334 |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_83 | 4 | 5 | 0.0000000102628 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_38 | 5 | 12 | 0.0000000000120067 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_63 | 4 | 5 | 0.000000000481414 |
| Brassica carinata | Contig365 | 1 | CH_bca_956 | 3 | 16 | 0.000509484 |
| Brassica napus | A03 | 1 | CH_bna_531 | 3 | 11 | 0.00017219 |
| Brassica napus | C07 | 1 | CH_bna_558 | 3 | 12 | 0.000229551 |
| Brassica oleracea | C7 | 1 | CH_bol_89 | 4 | 13 | 0.0000000370401 |
| Brassica rapa | A03 | 1 | CH_bra_288 | 3 | 15 | 0.00028724 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 1 | CH_can_136 | 3 | 4 | 0.000000163783 |
| Cardamine hirsuta | Chr8 | 1 | CH_chi_103 | 4 | 7 | 0.0000000247737 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_136 | 5 | 47 | 0.000000334293 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_196 | 3 | 3 | 0.00000364869 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_28 | 6 | 8 | 0.00000000000000658677 |
| Eutrema salsugineum | scaffold_3 | 1 | CH_esa_122 | 3 | 4 | 0.0000057395 |
| Fragaria vesca | Fvb5 | 1 | CH_fve_169 | 3 | 5 | 0.0000005205 |
| Prunus persica | Pp05 | 1 | CH_ppe_199 | 3 | 4 | 0.000000333857 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_537 | 2 | 2 | 0.000867002 |
| Quercus lobata | 11 | 1 | CH_qlo_282 | 4 | 7 | 0.00000000101125 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_364 | 3 | 9 | 0.00000200188 |
| Sechium edule | LG07 | 1 | CH_sed_119 | 3 | 6 | 0.00000152655 |
| Theobroma cacao | Chromosome_3 | 1 | CH_tca_160 | 3 | 3 | 0.000000160923 |
| Tarenaya hassleriana | NW_010960187.1 | 1 | CH_tha_72 | 3 | 3 | 0.00000161 |
| Vitis vinifera | chr16 | 1 | CH_vvi_373 | 3 | 21 | 0.000402888 |
| Aethionema arabicum | LG-9 | 2 | CH_aar_182 | 3 | 10 | 0.000246663 |
| Aethionema arabicum | LG-6 | 2 | CH_aar_94 | 3 | 3 | 0.00000206013 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_147 | 5 | 42 | 0.000000739456 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_69 | 4 | 4 | 0.00000000205334 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_83 | 4 | 5 | 0.0000000102628 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_38 | 5 | 12 | 0.0000000000120067 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_63 | 4 | 5 | 0.000000000481414 |
| Brassica carinata | Contig365 | 2 | CH_bca_956 | 3 | 16 | 0.000509484 |
| Brassica oleracea | C7 | 2 | CH_bol_89 | 4 | 13 | 0.0000000370401 |
| Brassica rapa | A03 | 2 | CH_bra_288 | 3 | 15 | 0.00028724 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 2 | CH_can_136 | 3 | 4 | 0.000000163783 |
| Cardamine hirsuta | Chr8 | 2 | CH_chi_103 | 4 | 7 | 0.0000000247737 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_136 | 5 | 47 | 0.000000334293 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_196 | 3 | 3 | 0.00000364869 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_28 | 6 | 8 | 0.00000000000000658677 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_832 | 2 | 2 | 0.000351165 |
| Eutrema salsugineum | scaffold_3 | 2 | CH_esa_122 | 3 | 4 | 0.0000057395 |
| Fragaria vesca | Fvb5 | 2 | CH_fve_169 | 3 | 5 | 0.0000005205 |
| Prunus persica | Pp05 | 2 | CH_ppe_199 | 3 | 4 | 0.000000333857 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_537 | 2 | 2 | 0.000867002 |
| Quercus lobata | 11 | 2 | CH_qlo_282 | 4 | 7 | 0.00000000101125 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_364 | 3 | 9 | 0.00000200188 |
| Sechium edule | LG07 | 2 | CH_sed_119 | 3 | 6 | 0.00000152655 |
| Theobroma cacao | Chromosome_3 | 2 | CH_tca_160 | 3 | 3 | 0.000000160923 |
| Tarenaya hassleriana | NW_010960187.1 | 2 | CH_tha_72 | 3 | 3 | 0.00000161 |
| Vitis vinifera | chr16 | 2 | CH_vvi_373 | 3 | 21 | 0.000402888 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |