Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.cysteine-type peptidase activities.C13-class asparaginyl endopeptidase (Legumain)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_87 | 3 | 9 | 0.0000089224 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 1 | CH_arhy_190 | 4 | 8 | 0.0000000102498 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 1 | CH_arhy_444 | 3 | 9 | 0.0000631831 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 1 | CH_atr_92 | 3 | 4 | 0.000000151455 |
| Brassica carinata | ChrC09 | 1 | CH_bca_1099 | 2 | 2 | 0.000769551 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_35 | 5 | 14 | 0.0000000000148037 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_152 | 3 | 6 | 0.00000129326 |
| Coffea canephora | chr8 | 1 | CH_ccan_218 | 2 | 4 | 0.0000766598 |
| Citrus clementina | scaffold_10 | 1 | CH_ccl_202 | 3 | 6 | 0.00000201819 |
| Cardamine hirsuta | Chr3 | 1 | CH_chi_117 | 3 | 3 | 0.000000071667 |
| Carya illinoinensis | Chr16 | 1 | CH_cil_537 | 2 | 2 | 0.000619828 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 1 | CH_cqu_313 | 3 | 15 | 0.0000535693 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_105 | 3 | 3 | 0.0000000610156 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_257 | 4 | 4 | 0.0000000000421052 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_156 | 3 | 3 | 0.000000291523 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_34 | 6 | 6 | 1.55288e-17 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_93 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr04 | 1 | CH_mdo_28 | 6 | 10 | 3.42265e-16 |
| Nicotiana tabacum | Nitab4.5_0000359 | 1 | CH_nta_11 | 4 | 6 | 0.000000000059454 |
| Petunia axillaris | Peaxi162Scf00436 | 1 | CH_pax_5 | 7 | 9 | 1.23821e-20 |
| Quercus lobata | CM012294 | 1 | CH_qlo_412 | 3 | 3 | 0.000000139945 |
| Simmondsia chinensis | GWHAASQ00000009 | 1 | CH_sci_305 | 2 | 2 | 0.000851426 |
| Simmondsia chinensis | GWHAASQ00000023 | 1 | CH_sci_306 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_1322 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_3 | 12 | 29 | 1.57243e-31 |
| Solanum pennellii | Spenn-ch08 | 1 | CH_spe_16 | 8 | 30 | 1.04635e-19 |
| Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_37 | 6 | 11 | 1.02852e-16 |
| Selenicereus undatus | Scaffold_33673 | 1 | CH_sun_282 | 2 | 2 | 0.000726639 |
| Selenicereus undatus | Scaffold_19641 | 1 | CH_sun_283 | 2 | 2 | 0.000726639 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_376 | 2 | 2 | 0.000454184 |
| Utricularia gibba | unitig_578 | 1 | CH_ugi_260 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_435 | 2 | 2 | 0.000929238 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_87 | 3 | 9 | 0.0000089224 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 2 | CH_arhy_190 | 4 | 8 | 0.0000000102498 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 2 | CH_arhy_444 | 3 | 9 | 0.0000631831 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 2 | CH_atr_92 | 3 | 4 | 0.000000151455 |
| Brassica carinata | ChrC09 | 2 | CH_bca_1099 | 2 | 2 | 0.000769551 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_35 | 5 | 14 | 0.0000000000148037 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_152 | 3 | 6 | 0.00000129326 |
| Coffea canephora | chr8 | 2 | CH_ccan_218 | 2 | 4 | 0.0000766598 |
| Citrus clementina | scaffold_10 | 2 | CH_ccl_202 | 3 | 6 | 0.00000201819 |
| Cardamine hirsuta | Chr3 | 2 | CH_chi_117 | 3 | 3 | 0.000000071667 |
| Carya illinoinensis | Chr16 | 2 | CH_cil_537 | 2 | 2 | 0.000619828 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 2 | CH_cqu_313 | 3 | 15 | 0.0000535693 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_105 | 3 | 3 | 0.0000000610156 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_257 | 4 | 4 | 0.0000000000421052 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_156 | 3 | 3 | 0.000000291523 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_34 | 6 | 6 | 1.55288e-17 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_93 | 4 | 5 | 0.000000000142588 |
| Malus domestica | Chr04 | 2 | CH_mdo_28 | 6 | 10 | 3.42265e-16 |
| Nicotiana tabacum | Nitab4.5_0000359 | 2 | CH_nta_11 | 4 | 6 | 0.000000000059454 |
| Petunia axillaris | Peaxi162Scf00436 | 2 | CH_pax_5 | 7 | 9 | 1.23821e-20 |
| Quercus lobata | CM012294 | 2 | CH_qlo_412 | 3 | 3 | 0.000000139945 |
| Simmondsia chinensis | GWHAASQ00000009 | 2 | CH_sci_305 | 2 | 2 | 0.000851426 |
| Simmondsia chinensis | GWHAASQ00000023 | 2 | CH_sci_306 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_1322 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_3 | 12 | 29 | 1.57243e-31 |
| Solanum pennellii | Spenn-ch08 | 2 | CH_spe_16 | 8 | 30 | 1.04635e-19 |
| Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_37 | 6 | 11 | 1.02852e-16 |
| Selenicereus undatus | Scaffold_33673 | 2 | CH_sun_282 | 2 | 2 | 0.000726639 |
| Selenicereus undatus | Scaffold_19641 | 2 | CH_sun_283 | 2 | 2 | 0.000726639 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_376 | 2 | 2 | 0.000454184 |
| Utricularia gibba | unitig_578 | 2 | CH_ugi_260 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_435 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |