Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.proteolysis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr1 1 CH_ath_39 8 11 0.0000000000122897
Arabidopsis thaliana Chr2 1 CH_ath_427 5 14 0.000806698
Brassica napus C06 1 CH_bna_408 5 5 0.0000189651
Camellia sinensis var. sinensis Chr1 1 CH_camsi_187 9 18 0.00000000302594
Capsicum annuum PGAv.1.6.scaffold546 1 CH_can_181 7 11 0.00000174369
Capsicum annuum PGAv.1.6.scaffold38 1 CH_can_226 5 5 0.0000230691
Helianthus annuus HanXRQChr13 1 CH_han_658 6 14 0.000405278
Lupinus albus Lalb_Chr21 1 CH_lal_65 10 23 0.0000000150902
Pisum sativum chr5LG3 1 CH_psa_130 7 13 0.000000365791
Papaver somniferum NC_039358.1 1 CH_pso_124 11 27 0.0000000000663449
Quercus lobata 7 1 CH_qlo_922 9 45 0.000395477
Sequoiadendron giganteum chr9 1 CH_sgi_1267 4 4 0.000375551
Solanum pennellii Spenn-ch04 1 CH_spe_76 14 79 0.000000000431239
Arabidopsis thaliana Chr1 2 CH_ath_39 8 11 0.0000000000122897
Arabidopsis thaliana Chr2 2 CH_ath_427 5 14 0.000806698
Camellia sinensis var. sinensis Chr1 2 CH_camsi_187 9 18 0.00000000302594
Capsicum annuum PGAv.1.6.scaffold546 2 CH_can_181 7 11 0.00000174369
Capsicum annuum PGAv.1.6.scaffold38 2 CH_can_226 5 5 0.0000230691
Helianthus annuus HanXRQChr13 2 CH_han_658 6 14 0.000405278
Lupinus albus Lalb_Chr21 2 CH_lal_65 10 23 0.0000000150902
Pisum sativum chr5LG3 2 CH_psa_130 7 13 0.000000365791
Papaver somniferum NC_039358.1 2 CH_pso_124 11 27 0.0000000000663449
Quercus lobata 7 2 CH_qlo_922 9 45 0.000395477
Sequoiadendron giganteum chr9 2 CH_sgi_1267 4 4 0.000375551
Solanum pennellii Spenn-ch04 2 CH_spe_76 14 79 0.000000000431239

Available child term results

Ontology identifier Description Number of clusters
19.4.1 Protein homeostasis.proteolysis.cysteine-type peptidase activities 2
19.4.1.1 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C1-class protease (Papain) 217
19.4.1.2 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C2-class calcium-activated protease (Phytocalpain) 8
19.4.1.3 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C13-class asparaginyl endopeptidase (Legumain) 64
19.4.1.4 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C15-class pyrrolidone-carboxylate peptidase 13
19.4.1.5 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C26-class gamma-glutamyl peptidase 55
19.4.1.6 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C50-class protease separase (AESP) 2
19.4.1.7 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C97-class peptidase (PPPDE) 4
19.4.2 Protein homeostasis.proteolysis.serine-type peptidase activities 20
19.4.2.1 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families 22
19.4.2.1.1 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT1) 70
19.4.2.1.2 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT2) 6
19.4.2.1.3 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT3) 53
19.4.2.1.4 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT4) 128
19.4.2.1.5 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT5) 59
19.4.2.1.6 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT6.1) 12
19.4.2.1.7 Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT6.2) 23
19.4.2.10 Protein homeostasis.proteolysis.serine-type peptidase activities.S9-class plastidial glutamyl peptidase (CGEP) 16
19.4.2.2 Protein homeostasis.proteolysis.serine-type peptidase activities.S10-class serine carboxypeptidase (SCPL) 450
19.4.2.3 Protein homeostasis.proteolysis.serine-type peptidase activities.S1-class protease (Deg) 35
19.4.2.4 Protein homeostasis.proteolysis.serine-type peptidase activities.S16-class protease (LON) 20
19.4.2.5 Protein homeostasis.proteolysis.serine-type peptidase activities.S49-class plastidial protease (SppA) 26
19.4.2.6 Protein homeostasis.proteolysis.serine-type peptidase activities.S54-class protease (RBL)) 18
19.4.2.7 Protein homeostasis.proteolysis.serine-type peptidase activities.S28-class serine carboxypeptidase 133
19.4.2.8.2 Protein homeostasis.proteolysis.serine-type peptidase activities.mitochondrion Clp-type protease complex.chaperone component ClpX 22
19.4.2.9.1 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.proteolytic core component ClpP1/3-6 8
19.4.2.9.2 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.non-proteolytic core component ClpR 4
19.4.2.9.3 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.plant-specific stabilizing component ClpT 6
19.4.2.9.4 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpC 10
19.4.2.9.6 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.adaptor component ClpS 2
19.4.2.9.7 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.adaptor component ClpF 6
19.4.3.1 Protein homeostasis.proteolysis.aspartic-type peptidase activities.A1-class protease (Pepsin) 550
19.4.4.1 Protein homeostasis.proteolysis.threonine-type peptidase activities.T3-class gamma-glutamyl transpeptidase (GGT) 58
19.4.5 Protein homeostasis.proteolysis.metallopeptidase activities 4
19.4.5.1 Protein homeostasis.proteolysis.metallopeptidase activities.M3-class metalloprotease 3
19.4.5.2 Protein homeostasis.proteolysis.metallopeptidase activities.M8-class metalloprotease (Leishmanolysin) 8
19.4.5.3 Protein homeostasis.proteolysis.metallopeptidase activities.M10-class metalloprotease (Matrixin) 169
19.4.5.4.1 Protein homeostasis.proteolysis.metallopeptidase activities.M16 families.peptidase (PQQL-like) 10
19.4.5.4.2 Protein homeostasis.proteolysis.metallopeptidase activities.M16 families.peptidase (Nardilysin-like) 65
19.4.5.5.1 Protein homeostasis.proteolysis.metallopeptidase activities.M48 families.zinc metalloprotease (PGM48) 8
19.4.5.5.2 Protein homeostasis.proteolysis.metallopeptidase activities.M48 families.zinc metalloprotease (STE24) 14
19.4.5.5.3 Protein homeostasis.proteolysis.metallopeptidase activities.M48 families.zinc metalloprotease (OMA1) 45
19.4.5.6.1 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M24-class methionyl aminopeptidase (MAP1) 20
19.4.5.6.2 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M24-class methionyl aminopeptidase (MAP2) 14
19.4.5.6.3 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M17-class leucyl aminopeptidase (LAP) 33
19.4.5.6.4 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M18-class aspartyl aminopeptidase (DAP) 30
19.4.5.6.5 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M1-class neutral/aromatic-hydroxyl amino acid aminopeptidase 52
19.4.5.6.6 Protein homeostasis.proteolysis.metallopeptidase activities.aminopeptidase activities.M20-class IAA-amino acid hydrolase 70
19.4.5.7.1 Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M14-class carboxypeptidase 2
19.4.5.7.2 Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M14-class carboxypeptidase (SOL) 16
19.4.5.7.3 Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M28-class carboxypeptidase 36
19.4.5.8.1.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.component FtsH4/11 10
19.4.5.8.1.2.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH3/10 matrix-AAA protease heterodimers.component Fts3/10 16
19.4.5.8.2.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH1/2/5/6/8 2
19.4.5.8.2.2 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH7/9 2
19.4.6 Protein homeostasis.proteolysis.protease inhibitor activities 6
19.4.6.1 Protein homeostasis.proteolysis.protease inhibitor activities.Serpin protease inhibitor 191
19.4.6.2 Protein homeostasis.proteolysis.protease inhibitor activities.Kunitz protease inhibitor 251
19.4.6.3 Protein homeostasis.proteolysis.protease inhibitor activities.Bowman-Birk protease inhibitor 16
19.4.6.4 Protein homeostasis.proteolysis.protease inhibitor activities.PR6 protease inhibitor 144
19.4.6.5 Protein homeostasis.proteolysis.protease inhibitor activities.Cystatin protease inhibitor 94

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001