Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).delivery to proteasome.ubiquitin shuttling factor (DSK2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_220 2 2 0.0000660044
Arabidopsis thaliana Chr2 1 CH_ath_211 2 2 0.0000286492
Carya illinoinensis Chr06 1 CH_cil_193 3 3 0.0000000230519
Capsella rubella scaffold_3 1 CH_cru_249 2 2 0.0000731154
Erythranthe guttata scaffold_8 1 CH_egut_413 2 2 0.000436888
Physcomitrium patens Chr04 1 CH_ppa_201 2 2 0.000367636
Striga asiatica scaffold58 1 CH_sas_109 2 2 0.000375223
Solanum lycopersicum SL4.0ch02 1 CH_sly_35 7 22 1.97524e-17
Utricularia gibba unitig_899 1 CH_ugi_249 2 2 0.000440755
Arabidopsis lyrata scaffold_3 2 CH_aly_220 2 2 0.0000660044
Arabidopsis thaliana Chr2 2 CH_ath_211 2 2 0.0000286492
Carya illinoinensis Chr06 2 CH_cil_193 3 3 0.0000000230519
Capsella rubella scaffold_3 2 CH_cru_249 2 2 0.0000731154
Erythranthe guttata scaffold_8 2 CH_egut_413 2 2 0.000436888
Physcomitrium patens Chr04 2 CH_ppa_201 2 2 0.000367636
Striga asiatica scaffold58 2 CH_sas_109 2 2 0.000375223
Solanum lycopersicum SL4.0ch02 2 CH_sly_35 7 22 1.97524e-17
Utricularia gibba unitig_899 2 CH_ugi_249 2 2 0.000440755

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001