Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).substrate extraction.membrane protein retrotranslocase (DFM1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_688 2 2 0.000628705
Carya illinoinensis Chr08 1 CH_cil_527 2 2 0.000619828
Lonicera japonica GWHAAZE00000008 1 CH_lonja_601 2 2 0.000598874
Populus trichocarpa Chr04 1 CH_ptr_484 2 2 0.000578001
Quercus lobata 9 1 CH_qlo_134 5 6 0.000000000000017906
Rhododendron simsii chr03 1 CH_rsi_482 2 2 0.000387184
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_688 2 2 0.000628705
Carya illinoinensis Chr08 2 CH_cil_527 2 2 0.000619828
Lonicera japonica GWHAAZE00000008 2 CH_lonja_601 2 2 0.000598874
Populus trichocarpa Chr04 2 CH_ptr_484 2 2 0.000578001
Quercus lobata 9 2 CH_qlo_134 5 6 0.000000000000017906
Rhododendron simsii chr03 2 CH_rsi_482 2 2 0.000387184

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001