Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.BTB/POZ substrate adaptor activities.substrate adaptor (AHT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_99 3 4 0.00000279618
Brassica napus C03 1 CH_bna_291 3 3 0.00000151001
Brassica oleracea C3 1 CH_bol_124 3 3 0.000000458344
Capsicum annuum PGAv.1.6.scaffold203 1 CH_can_388 2 2 0.000495663
Corylus avellana 11 1 CH_cav_60 5 27 0.00000000116838
Coffea canephora chr2 1 CH_ccan_302 2 3 0.000357744
Carpinus fangiana Cfa01 1 CH_cfa_206 3 16 0.0000481227
Capsella rubella scaffold_4 1 CH_cru_179 3 3 0.00000132315
Eucalyptus grandis Chr06 1 CH_egr_94 7 10 1.25349e-19
Eutrema salsugineum scaffold_7 1 CH_esa_139 4 16 0.0000211944
Eutrema salsugineum scaffold_10 1 CH_esa_30 8 31 0.00000000000001788
Gossypium hirsutum D04 1 CH_ghi_70 5 5 0.0000000000000235935
Gossypium raimondii Chr12 1 CH_gra_33 5 5 0.0000000000000156148
Malus domestica Chr15 1 CH_mdo_93 4 4 0.0000000000343566
Manihot esculenta Chromosome18 1 CH_mes_482 2 2 0.000915947
Punica granatum NC_045130.1 1 CH_pgr_358 2 2 0.000750356
Physcomitrium patens Chr25 1 CH_ppa_318 2 2 0.000919089
Prunus persica Pp01 1 CH_ppe_19 8 8 1.21682e-23
Papaver somniferum NC_039366.1 1 CH_pso_171 4 6 0.0000000076839
Papaver somniferum NC_039368.1 1 CH_pso_188 4 7 0.0000000179253
Papaver somniferum NW_020627707.1 1 CH_pso_355 3 4 0.00000791232
Papaver somniferum NC_039365.1 1 CH_pso_383 3 5 0.0000197767
Quercus lobata 9 1 CH_qlo_998 3 27 0.000653016
Striga asiatica scaffold60 1 CH_sas_141 2 2 0.000625371
Theobroma cacao Chromosome_10 1 CH_tca_428 2 2 0.000732386
Tarenaya hassleriana NW_010966881.1 1 CH_tha_75 3 4 0.00000245843
Aethionema arabicum LG-5 2 CH_aar_99 3 4 0.00000279618
Brassica oleracea C3 2 CH_bol_124 3 3 0.000000458344
Capsicum annuum PGAv.1.6.scaffold203 2 CH_can_388 2 2 0.000495663
Corylus avellana 11 2 CH_cav_60 5 27 0.00000000116838
Coffea canephora chr2 2 CH_ccan_302 2 3 0.000357744
Carpinus fangiana Cfa01 2 CH_cfa_206 3 16 0.0000481227
Capsella rubella scaffold_4 2 CH_cru_179 3 3 0.00000132315
Eucalyptus grandis Chr06 2 CH_egr_94 7 10 1.25349e-19
Eutrema salsugineum scaffold_7 2 CH_esa_139 4 16 0.0000211944
Eutrema salsugineum scaffold_10 2 CH_esa_30 8 31 0.00000000000001788
Gossypium hirsutum D04 2 CH_ghi_70 5 5 0.0000000000000235935
Gossypium raimondii Chr12 2 CH_gra_33 5 5 0.0000000000000156148
Malus domestica Chr15 2 CH_mdo_93 4 4 0.0000000000343566
Manihot esculenta Chromosome18 2 CH_mes_482 2 2 0.000915947
Punica granatum NC_045130.1 2 CH_pgr_358 2 2 0.000750356
Physcomitrium patens Chr25 2 CH_ppa_318 2 2 0.000919089
Prunus persica Pp01 2 CH_ppe_19 8 8 1.21682e-23
Papaver somniferum NC_039366.1 2 CH_pso_171 4 6 0.0000000076839
Papaver somniferum NC_039368.1 2 CH_pso_188 4 7 0.0000000179253
Papaver somniferum NW_020627707.1 2 CH_pso_355 3 4 0.00000791232
Papaver somniferum NC_039365.1 2 CH_pso_383 3 5 0.0000197767
Quercus lobata 9 2 CH_qlo_998 3 27 0.000653016
Striga asiatica scaffold60 2 CH_sas_141 2 2 0.000625371
Theobroma cacao Chromosome_10 2 CH_tca_428 2 2 0.000732386
Tarenaya hassleriana NW_010966881.1 2 CH_tha_75 3 4 0.00000245843

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001