Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_362 1 CH_aag_1 16 50 7.76792e-33
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_29 5 15 0.000000110062
Arabidopsis lyrata scaffold_5 1 CH_aly_189 3 3 0.00000869167
Arabidopsis lyrata scaffold_3 1 CH_aly_190 3 3 0.00000869167
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_109 3 5 0.0000594664
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_36 4 6 0.0000000488092
Arabidopsis thaliana Chr3 1 CH_ath_109 4 8 0.0000000295308
Arabidopsis thaliana Chr2 1 CH_ath_246 3 7 0.0000572639
Brassica carinata ChrC07 1 CH_bca_451 3 3 0.00000730674
Brassica carinata ChrC08 1 CH_bca_733 3 6 0.000145997
Brassica napus C08 1 CH_bna_107 5 10 0.00000000102367
Brassica napus A09 1 CH_bna_397 3 3 0.0000159292
Brassica rapa A07 1 CH_bra_210 3 5 0.0000808018
Brassica rapa A09 1 CH_bra_63 4 4 0.0000000041663
Camellia sinensis var. sinensis Chr1 1 CH_camsi_283 5 43 0.000000138209
Cicer arietinum L. Ca_LG1_v3 1 CH_car_99 4 21 0.00000602043
Coffea canephora chr1 1 CH_ccan_105 3 25 0.00000125135
Ceratophyllum demersum 1 1 CH_cde_6 5 5 0.000000000000231179
Carpinus fangiana Cfa08 1 CH_cfa_163 3 3 0.0000070208
Cardamine hirsuta Chr5 1 CH_chi_94 4 5 0.0000000117859
Carya illinoinensis Chr08 1 CH_cil_116 5 8 0.0000000000186035
Carica papaya supercontig_37 1 CH_cpa_127 3 5 0.0000223541
Chenopodium quinoa C_Quinoa_Scaffold_3541 1 CH_cqu_204 4 8 0.000000912081
Chenopodium quinoa C_Quinoa_Scaffold_2048 1 CH_cqu_41 6 6 0.00000000000000595291
Chenopodium quinoa C_Quinoa_Scaffold_1412 1 CH_cqu_42 8 28 0.00000000000000721212
Capsella rubella scaffold_5 1 CH_cru_4 11 13 1.73167e-28
Davidia involucrata GWHABJS00000004 1 CH_din_78 4 4 0.00000000574048
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_111 7 77 0.0000000152541
Erythranthe guttata scaffold_2 1 CH_egut_108 4 4 0.00000000210813
Eutrema salsugineum scaffold_7 1 CH_esa_5 8 9 1.8428e-21
Fragaria x ananassa Fvb3-4 1 CH_fan_323 3 3 0.0000269085
Fragaria vesca Fvb3 1 CH_fve_126 4 5 0.000000038776
Gossypium raimondii Chr08 1 CH_gra_203 3 4 0.00000784441
Hydrangea macrophylla Hma1.2p1_0136F.1 1 CH_hma_67 3 3 0.000000647896
Magnolia biondii Chr13 1 CH_mbi_276 3 4 0.0000160905
Magnolia biondii Chr16 1 CH_mbi_277 3 5 0.0000160905
Medicago truncatula chr4 1 CH_mtr_34 9 10 1.44586e-21
Medicago truncatula chr8 1 CH_mtr_398 4 7 0.00000330548
Medicago truncatula chr7 1 CH_mtr_61 9 26 4.44982e-16
Nelumbo nucifera chr6 1 CH_nnu_464 2 2 0.000915631
Nicotiana tabacum Nitab4.5_0000096 1 CH_nta_80 3 5 0.0000397007
Olea europaea chr19 1 CH_oeu_110 3 4 0.00000488843
Oryza sativa ssp. japonica chr09 1 CH_osa_284 3 7 0.000166692
Oryza sativa ssp. japonica chr07 1 CH_osa_61 4 4 0.00000000214118
Petunia axillaris Peaxi162Scf00647 1 CH_pax_144 3 3 0.00000605891
Petunia axillaris Peaxi162Scf00145 1 CH_pax_274 3 7 0.000211697
Punica granatum NC_045132.1 1 CH_pgr_171 3 4 0.0000122929
Prunus persica Pp02 1 CH_ppe_481 3 10 0.00055936
Pisum sativum chr1LG6 1 CH_psa_192 3 5 0.0000277386
Pisum sativum chr7LG7 1 CH_psa_193 3 5 0.0000277386
Papaver somniferum NW_020618823.1 1 CH_pso_207 5 11 0.0000000291184
Papaver somniferum NC_039366.1 1 CH_pso_208 5 11 0.0000000291184
Papaver somniferum NW_020649859.1 1 CH_pso_228 4 4 0.0000000694081
Papaver somniferum NW_020650859.1 1 CH_pso_275 4 5 0.000000346783
Papaver somniferum NC_039358.1 1 CH_pso_32 8 11 7.33949e-18
Papaver somniferum NC_039359.1 1 CH_pso_4 15 19 4.80116e-38
Papaver somniferum NC_039363.1 1 CH_pso_560 3 4 0.000300427
Quercus lobata 4 1 CH_qlo_578 3 4 0.0000108725
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_305 5 43 0.000000367082
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_519 3 6 0.0000633569
Rhododendron simsii chr10 1 CH_rsi_151 4 5 0.00000000959068
Rhododendron simsii chr05 1 CH_rsi_395 3 7 0.000148447
Salvia bowleyana GWHASIU00000003 1 CH_sbo_297 4 78 0.0000503603
Sequoiadendron giganteum chr5 1 CH_sgi_309 5 12 0.000000000100316
Sequoiadendron giganteum chr1 1 CH_sgi_96 7 8 5.41934e-20
Solanum lycopersicum SL4.0ch10 1 CH_sly_131 4 5 0.00000000721678
Solanum lycopersicum SL4.0ch11 1 CH_sly_239 4 20 0.00000695804
Solanum pennellii Spenn-ch10 1 CH_spe_133 4 8 0.0000000564891
Solanum pennellii Spenn-ch11 1 CH_spe_195 3 3 0.0000024216
Solanum tuberosum ST4.03ch12 1 CH_stu_100 5 7 0.000000000301888
Solanum tuberosum ST4.03ch02 1 CH_stu_29 7 7 7.67522e-18
Solanum tuberosum ST4.03ch10 1 CH_stu_413 3 4 0.0000942305
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_146 4 9 0.00000244284
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_279 3 5 0.000223173
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_30 6 13 0.0000000000219959
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_144 3 3 0.00000155434
Vitis vinifera chr3 1 CH_vvi_176 3 3 0.000000486007
Zea mays 2 1 CH_zma_21 5 5 0.000000000000596183
Anthoceros agrestis Sc2ySwM_362 2 CH_aag_1 16 50 7.76792e-33
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_29 5 15 0.000000110062
Arabidopsis lyrata scaffold_5 2 CH_aly_189 3 3 0.00000869167
Arabidopsis lyrata scaffold_3 2 CH_aly_190 3 3 0.00000869167
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_109 3 5 0.0000594664
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_36 4 6 0.0000000488092
Arabidopsis thaliana Chr3 2 CH_ath_109 4 8 0.0000000295308
Arabidopsis thaliana Chr2 2 CH_ath_246 3 7 0.0000572639
Brassica carinata ChrC07 2 CH_bca_451 3 3 0.00000730674
Brassica carinata ChrC08 2 CH_bca_733 3 6 0.000145997
Brassica rapa A07 2 CH_bra_210 3 5 0.0000808018
Brassica rapa A09 2 CH_bra_63 4 4 0.0000000041663
Camellia sinensis var. sinensis Chr1 2 CH_camsi_283 5 43 0.000000138209
Cicer arietinum L. Ca_LG1_v3 2 CH_car_99 4 21 0.00000602043
Coffea canephora chr1 2 CH_ccan_105 3 25 0.00000125135
Ceratophyllum demersum 1 2 CH_cde_6 5 5 0.000000000000231179
Carpinus fangiana Cfa08 2 CH_cfa_163 3 3 0.0000070208
Cardamine hirsuta Chr5 2 CH_chi_94 4 5 0.0000000117859
Carya illinoinensis Chr08 2 CH_cil_116 5 8 0.0000000000186035
Carica papaya supercontig_37 2 CH_cpa_127 3 5 0.0000223541
Chenopodium quinoa C_Quinoa_Scaffold_3541 2 CH_cqu_204 4 8 0.000000912081
Chenopodium quinoa C_Quinoa_Scaffold_2048 2 CH_cqu_41 6 6 0.00000000000000595291
Chenopodium quinoa C_Quinoa_Scaffold_1412 2 CH_cqu_42 8 28 0.00000000000000721212
Capsella rubella scaffold_5 2 CH_cru_4 11 13 1.73167e-28
Davidia involucrata GWHABJS00000004 2 CH_din_78 4 4 0.00000000574048
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_111 7 77 0.0000000152541
Eucalyptus grandis Chr09 2 CH_egr_288 4 4 0.000000000297744
Eucalyptus grandis Chr05 2 CH_egr_815 3 13 0.000322572
Erythranthe guttata scaffold_2 2 CH_egut_108 4 4 0.00000000210813
Eutrema salsugineum scaffold_7 2 CH_esa_5 8 9 1.8428e-21
Fragaria x ananassa Fvb3-4 2 CH_fan_323 3 3 0.0000269085
Fragaria vesca Fvb3 2 CH_fve_126 4 5 0.000000038776
Gossypium raimondii Chr08 2 CH_gra_203 3 4 0.00000784441
Hydrangea macrophylla Hma1.2p1_0136F.1 2 CH_hma_67 3 3 0.000000647896
Magnolia biondii Chr13 2 CH_mbi_276 3 4 0.0000160905
Magnolia biondii Chr16 2 CH_mbi_277 3 5 0.0000160905
Nelumbo nucifera chr6 2 CH_nnu_464 2 2 0.000915631
Nicotiana tabacum Nitab4.5_0000096 2 CH_nta_80 3 5 0.0000397007
Olea europaea chr19 2 CH_oeu_110 3 4 0.00000488843
Oryza sativa ssp. japonica chr09 2 CH_osa_284 3 7 0.000166692
Oryza sativa ssp. japonica chr07 2 CH_osa_61 4 4 0.00000000214118
Petunia axillaris Peaxi162Scf00647 2 CH_pax_144 3 3 0.00000605891
Petunia axillaris Peaxi162Scf00145 2 CH_pax_274 3 7 0.000211697
Punica granatum NC_045132.1 2 CH_pgr_171 3 4 0.0000122929
Prunus persica Pp02 2 CH_ppe_481 3 10 0.00055936
Pisum sativum chr1LG6 2 CH_psa_192 3 5 0.0000277386
Pisum sativum chr7LG7 2 CH_psa_193 3 5 0.0000277386
Papaver somniferum NW_020618823.1 2 CH_pso_207 5 11 0.0000000291184
Papaver somniferum NC_039366.1 2 CH_pso_208 5 11 0.0000000291184
Papaver somniferum NW_020649859.1 2 CH_pso_228 4 4 0.0000000694081
Papaver somniferum NW_020650859.1 2 CH_pso_275 4 5 0.000000346783
Papaver somniferum NC_039358.1 2 CH_pso_32 8 11 7.33949e-18
Papaver somniferum NC_039359.1 2 CH_pso_4 15 19 4.80116e-38
Papaver somniferum NC_039363.1 2 CH_pso_560 3 4 0.000300427
Quercus lobata 4 2 CH_qlo_578 3 4 0.0000108725
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_305 5 43 0.000000367082
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_519 3 6 0.0000633569
Rhododendron simsii chr10 2 CH_rsi_151 4 5 0.00000000959068
Rhododendron simsii chr05 2 CH_rsi_395 3 7 0.000148447
Salvia bowleyana GWHASIU00000003 2 CH_sbo_297 4 78 0.0000503603
Sequoiadendron giganteum chr5 2 CH_sgi_309 5 12 0.000000000100316
Sequoiadendron giganteum chr1 2 CH_sgi_96 7 8 5.41934e-20
Solanum lycopersicum SL4.0ch10 2 CH_sly_131 4 5 0.00000000721678
Solanum lycopersicum SL4.0ch11 2 CH_sly_239 4 20 0.00000695804
Solanum pennellii Spenn-ch10 2 CH_spe_133 4 8 0.0000000564891
Solanum pennellii Spenn-ch11 2 CH_spe_195 3 3 0.0000024216
Solanum tuberosum ST4.03ch12 2 CH_stu_100 5 7 0.000000000301888
Solanum tuberosum ST4.03ch02 2 CH_stu_29 7 7 7.67522e-18
Solanum tuberosum ST4.03ch10 2 CH_stu_413 3 4 0.0000942305
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_146 4 9 0.00000244284
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_279 3 5 0.000223173
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_30 6 13 0.0000000000219959
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_144 3 3 0.00000155434
Vitis vinifera chr3 2 CH_vvi_176 3 3 0.000000486007
Zea mays 2 2 CH_zma_21 5 5 0.000000000000596183

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001