Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.scaffold component CUL1/CUL2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr9 1 CH_camsi_320 4 29 0.000000479775
Cardamine hirsuta Chr1 1 CH_chi_349 2 2 0.000414723
Durio zibethinus NW_019167904.1 1 CH_dzi_397 2 2 0.000973326
Eucalyptus grandis Chr02 1 CH_egr_97 7 11 3.44666e-19
Fragaria vesca Fvb5 1 CH_fve_96 4 10 0.00000000450564
Helianthus annuus HanXRQChr03 1 CH_han_711 2 3 0.00069554
Olea europaea scaffold1435 1 CH_oeu_396 2 2 0.000800683
Olea europaea chr17 1 CH_oeu_397 2 2 0.000800683
Oryza sativa ssp. japonica chr01 1 CH_osa_200 2 2 0.0000528123
Quercus lobata 6 1 CH_qlo_415 3 4 0.000000159926
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_120 5 13 0.00000000000613921
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_455 3 10 0.0000342983
Sequoiadendron giganteum chr10 1 CH_sgi_1065 2 2 0.000146145
Solanum lycopersicum SL4.0ch01 1 CH_sly_292 3 13 0.0000516674
Solanum tuberosum ST4.03ch09 1 CH_stu_281 3 10 0.00000472494
Camellia sinensis var. sinensis Chr9 2 CH_camsi_320 4 29 0.000000479775
Cardamine hirsuta Chr1 2 CH_chi_349 2 2 0.000414723
Durio zibethinus NW_019167904.1 2 CH_dzi_397 2 2 0.000973326
Eucalyptus grandis Chr02 2 CH_egr_97 7 11 3.44666e-19
Fragaria vesca Fvb5 2 CH_fve_96 4 10 0.00000000450564
Helianthus annuus HanXRQChr03 2 CH_han_711 2 3 0.00069554
Olea europaea scaffold1435 2 CH_oeu_396 2 2 0.000800683
Olea europaea chr17 2 CH_oeu_397 2 2 0.000800683
Oryza sativa ssp. japonica chr01 2 CH_osa_200 2 2 0.0000528123
Quercus lobata 6 2 CH_qlo_415 3 4 0.000000159926
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_120 5 13 0.00000000000613921
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_455 3 10 0.0000342983
Sequoiadendron giganteum chr10 2 CH_sgi_1065 2 2 0.000146145
Solanum lycopersicum SL4.0ch01 2 CH_sly_292 3 13 0.0000516674
Solanum tuberosum ST4.03ch09 2 CH_stu_281 3 10 0.00000472494

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001