Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_369 5 20 0.000135877
Carpinus fangiana Cfa02 1 CH_cfa_88 5 6 0.0000000332938
Lonicera japonica GWHAAZE00000003 1 CH_lonja_191 9 54 0.0000000771351
Lonicera japonica GWHAAZE00000008 1 CH_lonja_621 7 66 0.000607019
Papaver somniferum NC_039361.1 1 CH_pso_321 10 77 0.00000211608
Quercus lobata 11 1 CH_qlo_914 6 31 0.000330995
Solanum tuberosum ST4.03ch11 1 CH_stu_87 9 23 0.0000000000221055
Trochodendron aralioides group5 1 CH_tar_225 4 5 0.0000274997
Acer truncatum chr1 2 CH_acertr_369 5 20 0.000135877
Carpinus fangiana Cfa02 2 CH_cfa_88 5 6 0.0000000332938
Lonicera japonica GWHAAZE00000003 2 CH_lonja_191 9 54 0.0000000771351
Lonicera japonica GWHAAZE00000008 2 CH_lonja_621 7 66 0.000607019
Papaver somniferum NC_039361.1 2 CH_pso_321 10 77 0.00000211608
Quercus lobata 11 2 CH_qlo_914 6 31 0.000330995
Solanum tuberosum ST4.03ch11 2 CH_stu_87 9 23 0.0000000000221055
Trochodendron aralioides group5 2 CH_tar_225 4 5 0.0000274997

Available child term results

Ontology identifier Description Number of clusters
19.2.2.8.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.scaffold component CUL1/CUL2 30
19.2.2.8.1.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1 153
19.2.2.8.1.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities 6
19.2.2.8.1.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (UFO) 6
19.2.2.8.1.4.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (EDL) 2
19.2.2.8.1.4.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (FBX) 254
19.2.2.8.1.4.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (RAE-like) 2
19.2.2.8.1.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.adaptor protein exchange factor (CAND1) 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001