Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.SUMO conjugation (sumoylation).SUMO E3 ligase activities.E3 ligase (SIZ1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carya illinoinensis Chr13 1 CH_cil_415 2 2 0.000185948
Gossypium hirsutum D13 1 CH_ghi_191 3 3 0.0000000106947
Gossypium raimondii Chr13 1 CH_gra_236 2 2 0.0000536107
Magnolia biondii Chr05 1 CH_mbi_630 2 7 0.000728421
Physcomitrium patens Chr20 1 CH_ppa_282 2 2 0.000612726
Quercus lobata 8 1 CH_qlo_784 2 2 0.000154887
Vanilla planifolia CM028159.1 1 CH_vpl_255 2 2 0.000221664
Carya illinoinensis Chr13 2 CH_cil_415 2 2 0.000185948
Eucalyptus grandis Chr02 2 CH_egr_481 3 8 0.000000287705
Gossypium hirsutum D13 2 CH_ghi_191 3 3 0.0000000106947
Gossypium hirsutum A13 2 CH_ghi_604 2 2 0.000267016
Gossypium raimondii Chr13 2 CH_gra_236 2 2 0.0000536107
Magnolia biondii Chr05 2 CH_mbi_630 2 7 0.000728421
Physcomitrium patens Chr20 2 CH_ppa_282 2 2 0.000612726
Quercus lobata 8 2 CH_qlo_784 2 2 0.000154887
Vanilla planifolia CM028159.1 2 CH_vpl_255 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001