Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.SUMO conjugation (sumoylation).ubiquitin-fold protein (SUMO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-3 | 1 | CH_aar_268 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 1 | CH_acertr_1 | 20 | 33 | 8.00794e-53 |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_142 | 3 | 3 | 0.000000548948 |
| Brassica carinata | ChrC04 | 1 | CH_bca_1073 | 4 | 72 | 0.000705212 |
| Brassica carinata | ChrC05 | 1 | CH_bca_118 | 4 | 4 | 0.000000000696021 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 1 | CH_cqu_218 | 3 | 3 | 0.00000153229 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 1 | CH_cqu_219 | 3 | 3 | 0.00000153229 |
| Chlamydomonas reinhardtii | chromosome_16 | 1 | CH_cre_15 | 3 | 3 | 0.00000108662 |
| Chlamydomonas reinhardtii | chromosome_17 | 1 | CH_cre_6 | 4 | 4 | 0.000000000308998 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_209 | 3 | 4 | 0.00000178122 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_420 | 3 | 5 | 0.0000189323 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_491 | 2 | 2 | 0.000514007 |
| Medicago truncatula | chr8 | 1 | CH_mtr_339 | 3 | 3 | 0.00000055708 |
| Medicago truncatula | chr3 | 1 | CH_mtr_549 | 3 | 9 | 0.00004675 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_457 | 2 | 3 | 0.000784787 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_53 | 4 | 5 | 0.000000000154661 |
| Petunia axillaris | Peaxi162Scf00253 | 1 | CH_pax_141 | 3 | 4 | 0.00000489938 |
| Prunus persica | Pp04 | 1 | CH_ppe_210 | 3 | 3 | 0.000000701166 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_493 | 2 | 2 | 0.000578001 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_458 | 2 | 2 | 0.000734727 |
| Rhododendron simsii | chr09 | 1 | CH_rsi_578 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold8 | 1 | CH_sas_110 | 2 | 2 | 0.000375223 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_375 | 2 | 2 | 0.000272988 |
| Salix brachista | GWHAAZH00000002 | 1 | CH_sbr_378 | 2 | 2 | 0.00063014 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_383 | 3 | 16 | 0.000161764 |
| Theobroma cacao | Chromosome_10 | 1 | CH_tca_223 | 3 | 4 | 0.00000386126 |
| Tarenaya hassleriana | NW_010966177.1 | 1 | CH_tha_66 | 3 | 4 | 0.0000010244 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_503 | 1 | CH_tpr_91 | 4 | 13 | 0.000000117044 |
| Zea mays | 7 | 1 | CH_zma_250 | 2 | 2 | 0.000511313 |
| Zea mays | 8 | 1 | CH_zma_251 | 2 | 2 | 0.000511313 |
| Aethionema arabicum | LG-3 | 2 | CH_aar_268 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 2 | CH_acertr_1 | 20 | 33 | 8.00794e-53 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_142 | 3 | 3 | 0.000000548948 |
| Brassica carinata | ChrC04 | 2 | CH_bca_1073 | 4 | 72 | 0.000705212 |
| Brassica carinata | ChrC05 | 2 | CH_bca_118 | 4 | 4 | 0.000000000696021 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 2 | CH_cqu_218 | 3 | 3 | 0.00000153229 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1817 | 2 | CH_cqu_219 | 3 | 3 | 0.00000153229 |
| Chlamydomonas reinhardtii | chromosome_16 | 2 | CH_cre_15 | 3 | 3 | 0.00000108662 |
| Chlamydomonas reinhardtii | chromosome_17 | 2 | CH_cre_6 | 4 | 4 | 0.000000000308998 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_936 | 2 | 2 | 0.000877912 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_209 | 3 | 4 | 0.00000178122 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_420 | 3 | 5 | 0.0000189323 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_491 | 2 | 2 | 0.000514007 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_457 | 2 | 3 | 0.000784787 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_53 | 4 | 5 | 0.000000000154661 |
| Petunia axillaris | Peaxi162Scf00253 | 2 | CH_pax_141 | 3 | 4 | 0.00000489938 |
| Prunus persica | Pp04 | 2 | CH_ppe_210 | 3 | 3 | 0.000000701166 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_493 | 2 | 2 | 0.000578001 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_458 | 2 | 2 | 0.000734727 |
| Rhododendron simsii | chr09 | 2 | CH_rsi_578 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold8 | 2 | CH_sas_110 | 2 | 2 | 0.000375223 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_375 | 2 | 2 | 0.000272988 |
| Salix brachista | GWHAAZH00000002 | 2 | CH_sbr_378 | 2 | 2 | 0.00063014 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_383 | 3 | 16 | 0.000161764 |
| Theobroma cacao | Chromosome_10 | 2 | CH_tca_223 | 3 | 4 | 0.00000386126 |
| Tarenaya hassleriana | NW_010966177.1 | 2 | CH_tha_66 | 3 | 4 | 0.0000010244 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_503 | 2 | CH_tpr_91 | 4 | 13 | 0.000000117044 |
| Zea mays | 7 | 2 | CH_zma_250 | 2 | 2 | 0.000511313 |
| Zea mays | 8 | 2 | CH_zma_251 | 2 | 2 | 0.000511313 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |