Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).polyubiquitination.Ubc13-Uev1 conjugating E2 complex.component Ubc13

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_163 2 2 0.0000827917
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_342 2 2 0.000142146
Daucus carota DCARv2_Chr5 1 CH_dca_349 2 2 0.000382665
Papaver somniferum NW_020619603.1 1 CH_pso_130 4 7 0.000000000251903
Populus trichocarpa Chr10 1 CH_ptr_415 2 2 0.000346801
Populus trichocarpa Chr08 1 CH_ptr_416 2 2 0.000346801
Solanum pennellii Spenn-ch05 1 CH_spe_347 2 2 0.000133437
Solanum tuberosum ST4.03ch05 1 CH_stu_500 2 2 0.000307472
Selenicereus undatus Scaffold_19641 1 CH_sun_103 2 2 0.0000726639
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_163 2 2 0.0000827917
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_342 2 2 0.000142146
Daucus carota DCARv2_Chr5 2 CH_dca_349 2 2 0.000382665
Eucalyptus grandis Chr10 2 CH_egr_659 2 3 0.0000585274
Papaver somniferum NW_020619603.1 2 CH_pso_130 4 7 0.000000000251903
Populus trichocarpa Chr10 2 CH_ptr_415 2 2 0.000346801
Populus trichocarpa Chr08 2 CH_ptr_416 2 2 0.000346801
Solanum pennellii Spenn-ch05 2 CH_spe_347 2 2 0.000133437
Solanum tuberosum ST4.03ch05 2 CH_stu_500 2 2 0.000307472
Selenicereus undatus Scaffold_19641 2 CH_sun_103 2 2 0.0000726639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001