Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.E3 ubiquitin ligase (RBR-Ariadne)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_65 | 3 | 14 | 0.0000351313 |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_186 | 3 | 4 | 0.00000747405 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_186 | 3 | 5 | 0.00000560027 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_197 | 3 | 6 | 0.0000111989 |
| Brassica carinata | ChrB01 | 1 | CH_bca_44 | 7 | 39 | 0.00000000000176432 |
| Brassica carinata | ChrC05 | 1 | CH_bca_598 | 3 | 5 | 0.0000626044 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_79 | 5 | 8 | 0.000000000000467834 |
| Citrullus lanatus | CG_Chr11 | 1 | CH_cla_219 | 2 | 2 | 0.000887115 |
| Capsella rubella | scaffold_8 | 1 | CH_cru_212 | 3 | 4 | 0.0000116719 |
| Erythranthe guttata | scaffold_6 | 1 | CH_egut_10 | 10 | 22 | 5.11888e-24 |
| Fragaria x ananassa | Fvb2-4 | 1 | CH_fan_255 | 3 | 4 | 0.00000472417 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_207 | 3 | 4 | 0.00000249831 |
| Marchantia polymorpha | scaffold_28 | 1 | CH_mpo_44 | 3 | 4 | 0.00000073179 |
| Olea europaea | scaffold290 | 1 | CH_oeu_286 | 2 | 2 | 0.000320273 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_155 | 3 | 6 | 0.00000468411 |
| Petunia axillaris | Peaxi162Scf00273 | 1 | CH_pax_75 | 4 | 10 | 0.0000000460226 |
| Punica granatum | NC_045130.1 | 1 | CH_pgr_314 | 2 | 2 | 0.000450214 |
| Papaver somniferum | NW_020620381.1 | 1 | CH_pso_164 | 5 | 30 | 0.00000000557496 |
| Quercus lobata | CM012294 | 1 | CH_qlo_195 | 5 | 8 | 0.00000000000236256 |
| Rhododendron simsii | chr09 | 1 | CH_rsi_70 | 5 | 8 | 0.00000000000183477 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_1356 | 2 | 2 | 0.000730727 |
| Utricularia gibba | unitig_22 | 1 | CH_ugi_248 | 2 | 2 | 0.000440755 |
| Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_65 | 3 | 14 | 0.0000351313 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_186 | 3 | 4 | 0.00000747405 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_186 | 3 | 5 | 0.00000560027 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_197 | 3 | 6 | 0.0000111989 |
| Brassica carinata | ChrB01 | 2 | CH_bca_44 | 7 | 39 | 0.00000000000176432 |
| Brassica carinata | ChrC05 | 2 | CH_bca_598 | 3 | 5 | 0.0000626044 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_79 | 5 | 8 | 0.000000000000467834 |
| Citrullus lanatus | CG_Chr11 | 2 | CH_cla_219 | 2 | 2 | 0.000887115 |
| Capsella rubella | scaffold_8 | 2 | CH_cru_212 | 3 | 4 | 0.0000116719 |
| Erythranthe guttata | scaffold_6 | 2 | CH_egut_10 | 10 | 22 | 5.11888e-24 |
| Fragaria x ananassa | Fvb2-4 | 2 | CH_fan_255 | 3 | 4 | 0.00000472417 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_207 | 3 | 4 | 0.00000249831 |
| Lotus japonicus | chr3 | 2 | CH_lja_400 | 2 | 2 | 0.000715077 |
| Marchantia polymorpha | scaffold_28 | 2 | CH_mpo_44 | 3 | 4 | 0.00000073179 |
| Olea europaea | scaffold290 | 2 | CH_oeu_286 | 2 | 2 | 0.000320273 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_155 | 3 | 6 | 0.00000468411 |
| Petunia axillaris | Peaxi162Scf00273 | 2 | CH_pax_75 | 4 | 10 | 0.0000000460226 |
| Punica granatum | NC_045130.1 | 2 | CH_pgr_314 | 2 | 2 | 0.000450214 |
| Papaver somniferum | NW_020620381.1 | 2 | CH_pso_164 | 5 | 30 | 0.00000000557496 |
| Quercus lobata | CM012294 | 2 | CH_qlo_195 | 5 | 8 | 0.00000000000236256 |
| Rhododendron simsii | chr09 | 2 | CH_rsi_70 | 5 | 8 | 0.00000000000183477 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_1356 | 2 | 2 | 0.000730727 |
| Utricularia gibba | unitig_22 | 2 | CH_ugi_248 | 2 | 2 | 0.000440755 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |