Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (DA2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cardamine hirsuta Chr1 1 CH_chi_286 2 2 0.000207361
Helianthus annuus HanXRQChr10 1 CH_han_489 2 2 0.000115929
Solanum pennellii Spenn-ch07 1 CH_spe_134 3 6 0.0000000593489
Tripterygium wilfordii NC_052252.1 1 CH_twi_273 2 5 0.00055746
Cardamine hirsuta Chr1 2 CH_chi_286 2 2 0.000207361
Helianthus annuus HanXRQChr10 2 CH_han_489 2 2 0.000115929
Solanum pennellii Spenn-ch07 2 CH_spe_134 3 6 0.0000000593489
Tripterygium wilfordii NC_052252.1 2 CH_twi_273 2 5 0.00055746

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001