Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_185 | 3 | 3 | 0.0000063325 |
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_214 | 3 | 5 | 0.0000632707 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_34 | 5 | 5 | 0.00000000000165556 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_194 | 4 | 40 | 0.00000875615 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_72 | 4 | 6 | 0.00000000144404 |
| Brassica carinata | ChrC08 | 1 | CH_bca_558 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB03 | 1 | CH_bca_732 | 3 | 6 | 0.000145997 |
| Capsicum annuum | PGAv.1.6.scaffold140 | 1 | CH_can_367 | 3 | 14 | 0.00031223 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_78 | 4 | 4 | 0.00000000020868 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_41 | 6 | 12 | 0.000000000000098375 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_239 | 3 | 3 | 0.0000623084 |
| Capsella rubella | scaffold_2 | 1 | CH_cru_3 | 15 | 23 | 4.55878e-35 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_56 | 6 | 10 | 0.0000000000228685 |
| Eutrema salsugineum | scaffold_14 | 1 | CH_esa_6 | 9 | 18 | 7.1818e-21 |
| Medicago truncatula | chr5 | 1 | CH_mtr_361 | 4 | 13 | 0.00000088805 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_239 | 3 | 10 | 0.0000587087 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_542 | 3 | 11 | 0.000112344 |
| Rhododendron simsii | chr08 | 1 | CH_rsi_162 | 4 | 8 | 0.0000000279094 |
| Sechium edule | LG05 | 1 | CH_sed_50 | 4 | 4 | 0.00000000198278 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_283 | 3 | 6 | 0.0000375898 |
| Schrenkiella parvula | ch7-1 | 1 | CH_spa_153 | 3 | 7 | 0.000039017 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_69 | 4 | 7 | 0.00000001502 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_175 | 3 | 4 | 0.00000854611 |
| Vitis vinifera | chr15 | 1 | CH_vvi_193 | 3 | 3 | 0.00000104144 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_185 | 3 | 3 | 0.0000063325 |
| Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_214 | 3 | 5 | 0.0000632707 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_34 | 5 | 5 | 0.00000000000165556 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_194 | 4 | 40 | 0.00000875615 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_72 | 4 | 6 | 0.00000000144404 |
| Brassica carinata | ChrC08 | 2 | CH_bca_558 | 3 | 4 | 0.0000292177 |
| Brassica carinata | ChrB03 | 2 | CH_bca_732 | 3 | 6 | 0.000145997 |
| Capsicum annuum | PGAv.1.6.scaffold140 | 2 | CH_can_367 | 3 | 14 | 0.00031223 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_78 | 4 | 4 | 0.00000000020868 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_41 | 6 | 12 | 0.000000000000098375 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_239 | 3 | 3 | 0.0000623084 |
| Capsella rubella | scaffold_2 | 2 | CH_cru_3 | 15 | 23 | 4.55878e-35 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_56 | 6 | 10 | 0.0000000000228685 |
| Eutrema salsugineum | scaffold_14 | 2 | CH_esa_6 | 9 | 18 | 7.1818e-21 |
| Gossypium hirsutum | A13 | 2 | CH_ghi_577 | 3 | 8 | 0.000174958 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_239 | 3 | 10 | 0.0000587087 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_542 | 3 | 11 | 0.000112344 |
| Rhododendron simsii | chr08 | 2 | CH_rsi_162 | 4 | 8 | 0.0000000279094 |
| Sechium edule | LG05 | 2 | CH_sed_50 | 4 | 4 | 0.00000000198278 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_283 | 3 | 6 | 0.0000375898 |
| Schrenkiella parvula | ch7-1 | 2 | CH_spa_153 | 3 | 7 | 0.000039017 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_69 | 4 | 7 | 0.00000001502 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_175 | 3 | 4 | 0.00000854611 |
| Vitis vinifera | chr15 | 2 | CH_vvi_193 | 3 | 3 | 0.00000104144 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |