Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (RIE1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC03 1 CH_bca_656 3 6 0.0000819691
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_151 3 3 0.000000253709
Helianthus annuus HanXRQChr01 1 CH_han_58 5 5 0.0000000000000502278
Medicago truncatula chr7 1 CH_mtr_490 3 9 0.0000350658
Sequoiadendron giganteum chr8 1 CH_sgi_1050 2 2 0.000146145
Brassica carinata ChrC03 2 CH_bca_656 3 6 0.0000819691
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_151 3 3 0.000000253709
Helianthus annuus HanXRQChr01 2 CH_han_58 5 5 0.0000000000000502278
Sequoiadendron giganteum chr8 2 CH_sgi_1050 2 2 0.000146145

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001