Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (RFI2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_9 1 CH_aly_441 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_618 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_619 2 2 0.000449075
Ceratophyllum demersum 1 1 CH_cde_265 2 2 0.000789796
Ceratophyllum demersum 1 1 CH_cde_266 2 2 0.000789796
Daucus carota DCARv2_Chr6 1 CH_dca_459 2 2 0.000956663
Daucus carota DCARv2_Chr2 1 CH_dca_460 2 2 0.000956663
Helianthus annuus HanXRQChr09 1 CH_han_311 3 7 0.00000156757
Lonicera japonica GWHAAZE00000005 1 CH_lonja_407 3 20 0.000061253
Magnolia biondii Chr11 1 CH_mbi_669 2 3 0.00087414
Salix brachista GWHAAZH00000013 1 CH_sbr_40 6 55 0.00000000000451913
Theobroma cacao Chromosome_4 1 CH_tca_385 2 2 0.000439432
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_358 2 2 0.000557543
Arabidopsis lyrata scaffold_9 2 CH_aly_441 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_618 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_619 2 2 0.000449075
Ceratophyllum demersum 1 2 CH_cde_265 2 2 0.000789796
Ceratophyllum demersum 1 2 CH_cde_266 2 2 0.000789796
Daucus carota DCARv2_Chr6 2 CH_dca_459 2 2 0.000956663
Daucus carota DCARv2_Chr2 2 CH_dca_460 2 2 0.000956663
Helianthus annuus HanXRQChr09 2 CH_han_311 3 7 0.00000156757
Lonicera japonica GWHAAZE00000005 2 CH_lonja_407 3 20 0.000061253
Magnolia biondii Chr11 2 CH_mbi_669 2 3 0.00087414
Salix brachista GWHAAZH00000013 2 CH_sbr_40 6 55 0.00000000000451913
Theobroma cacao Chromosome_4 2 CH_tca_385 2 2 0.000439432
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_358 2 2 0.000557543

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001