Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB02 | 1 | CH_bca_1114 | 3 | 4 | 0.000849445 |
| Brassica carinata | ChrB01 | 1 | CH_bca_1115 | 3 | 4 | 0.000849445 |
| Brassica napus | C03 | 1 | CH_bna_283 | 4 | 5 | 0.0000012661 |
| Brassica oleracea | C3 | 1 | CH_bol_148 | 4 | 6 | 0.0000014384 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1992 | 1 | CH_cqu_316 | 3 | 3 | 0.0000620461 |
| Fragaria x ananassa | Fvb2-4 | 1 | CH_fan_412 | 3 | 5 | 0.000179498 |
| Lotus japonicus | chr1 | 1 | CH_lja_162 | 4 | 5 | 0.000000816288 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_256 | 4 | 7 | 0.00000327459 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_466 | 3 | 4 | 0.000310421 |
| Magnolia biondii | Chr19 | 1 | CH_mbi_73 | 5 | 5 | 0.0000000000135472 |
| Malus domestica | Chr09 | 1 | CH_mdo_415 | 3 | 3 | 0.0000987072 |
| Malus domestica | Chr13 | 1 | CH_mdo_661 | 3 | 4 | 0.000394468 |
| Medicago truncatula | chr1 | 1 | CH_mtr_157 | 5 | 5 | 0.0000000000894989 |
| Petunia axillaris | Peaxi162Scf00206 | 1 | CH_pax_227 | 3 | 4 | 0.000194219 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_7 | 8 | 8 | 4.80295e-20 |
| Quercus lobata | 11 | 1 | CH_qlo_499 | 5 | 22 | 0.00000103757 |
| Quercus lobata | 9 | 1 | CH_qlo_837 | 3 | 4 | 0.000170363 |
| Rhododendron simsii | chr04 | 1 | CH_rsi_122 | 6 | 15 | 0.00000000116868 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_266 | 3 | 3 | 0.0000916276 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 1 | CH_tpr_267 | 3 | 3 | 0.0000916276 |
| Brassica carinata | ChrB02 | 2 | CH_bca_1114 | 3 | 4 | 0.000849445 |
| Brassica carinata | ChrB01 | 2 | CH_bca_1115 | 3 | 4 | 0.000849445 |
| Brassica oleracea | C3 | 2 | CH_bol_148 | 4 | 6 | 0.0000014384 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1992 | 2 | CH_cqu_316 | 3 | 3 | 0.0000620461 |
| Fragaria x ananassa | Fvb2-4 | 2 | CH_fan_412 | 3 | 5 | 0.000179498 |
| Lotus japonicus | chr1 | 2 | CH_lja_162 | 4 | 5 | 0.000000816288 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_256 | 4 | 7 | 0.00000327459 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_466 | 3 | 4 | 0.000310421 |
| Magnolia biondii | Chr19 | 2 | CH_mbi_73 | 5 | 5 | 0.0000000000135472 |
| Malus domestica | Chr09 | 2 | CH_mdo_415 | 3 | 3 | 0.0000987072 |
| Malus domestica | Chr13 | 2 | CH_mdo_661 | 3 | 4 | 0.000394468 |
| Petunia axillaris | Peaxi162Scf00206 | 2 | CH_pax_227 | 3 | 4 | 0.000194219 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_7 | 8 | 8 | 4.80295e-20 |
| Quercus lobata | 11 | 2 | CH_qlo_499 | 5 | 22 | 0.00000103757 |
| Quercus lobata | 9 | 2 | CH_qlo_837 | 3 | 4 | 0.000170363 |
| Rhododendron simsii | chr04 | 2 | CH_rsi_122 | 6 | 15 | 0.00000000116868 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_266 | 3 | 3 | 0.0000916276 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 2 | CH_tpr_267 | 3 | 3 | 0.0000916276 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |