Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.bifunctional co-chaperone and E3 ubiquitin ligase (CHIP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00099 1 CH_atr_157 2 2 0.0000794407
Glycine max Gm16 1 CH_gma_481 2 3 0.000341591
Quercus lobata 9 1 CH_qlo_633 2 2 0.0000516289
Sequoiadendron giganteum chr10 1 CH_sgi_480 3 3 0.0000000355983
Amborella trichopoda AmTr_v1.0_scaffold00099 2 CH_atr_157 2 2 0.0000794407
Glycine max Gm16 2 CH_gma_481 2 3 0.000341591
Quercus lobata 9 2 CH_qlo_633 2 2 0.0000516289
Sequoiadendron giganteum chr10 2 CH_sgi_480 3 3 0.0000000355983

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001