Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-II-residues E3 ubiquitin ligase (PRT1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_781 2 2 0.000213764
Brassica oleracea C7 1 CH_bol_393 2 4 0.000588319
Corylus avellana 8 1 CH_cav_233 2 2 0.0000766695
Coffea canephora chr1 1 CH_ccan_251 2 9 0.000153318
Eutrema salsugineum scaffold_4 1 CH_esa_221 2 3 0.000228441
Helianthus annuus HanXRQChr01 1 CH_han_710 2 3 0.00069554
Quercus lobata 9 1 CH_qlo_642 2 2 0.0000516289
Sequoiadendron giganteum chr10 1 CH_sgi_506 3 6 0.0000000711915
Sapria himalayana scaffold1_25991295 1 CH_shi_212 2 5 0.000571755
Selenicereus undatus Scaffold_19641 1 CH_sun_106 2 2 0.0000726639
Brassica carinata ChrC06 2 CH_bca_781 2 2 0.000213764
Brassica oleracea C7 2 CH_bol_393 2 4 0.000588319
Corylus avellana 8 2 CH_cav_233 2 2 0.0000766695
Coffea canephora chr1 2 CH_ccan_251 2 9 0.000153318
Eucalyptus grandis Chr11 2 CH_egr_662 2 2 0.0000585274
Eutrema salsugineum scaffold_4 2 CH_esa_221 2 3 0.000228441
Helianthus annuus HanXRQChr01 2 CH_han_710 2 3 0.00069554
Quercus lobata 9 2 CH_qlo_642 2 2 0.0000516289
Sequoiadendron giganteum chr10 2 CH_sgi_506 3 6 0.0000000711915
Sapria himalayana scaffold1_25991295 2 CH_shi_212 2 5 0.000571755
Selenicereus undatus Scaffold_19641 2 CH_sun_106 2 2 0.0000726639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001