Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.protein quality control.smallHsp holdase chaperone activities.class-C-II protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_46 3 17 0.00000656655
Acer truncatum chr7 1 CH_acertr_90 3 3 0.000000007455
Actinidia chinensis Lachesis_group7 1 CH_ach_200 2 2 0.000325928
Arabidopsis lyrata scaffold_6 1 CH_aly_241 2 2 0.0000660044
Aquilegia oxysepala CHR07 1 CH_aox_32 4 6 0.000000000348153
Arabidopsis thaliana Chr5 1 CH_ath_226 2 2 0.0000286492
Amborella trichopoda AmTr_v1.0_scaffold00146 1 CH_atr_23 5 5 2.98771e-16
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_189 2 2 0.0000827917
Capsicum annuum PGAv.1.6.scaffold338 1 CH_can_285 2 2 0.0000826105
Cicer arietinum L. Ca_LG5_v3 1 CH_car_167 2 2 0.0000778301
Corylus avellana 7 1 CH_cav_364 2 2 0.000230008
Chara braunii BFEA01000721 1 CH_cbr_4 5 6 0.000000000000303523
Chara braunii BFEA01000698 1 CH_cbr_9 4 4 0.000000000234456
Citrus clementina scaffold_1 1 CH_ccl_376 2 3 0.000246083
Carpinus fangiana Cfa07 1 CH_cfa_106 3 4 0.000000137654
Cardamine hirsuta Chr6 1 CH_chi_251 2 2 0.0000691204
Carya illinoinensis Chr15 1 CH_cil_16 8 8 1.10788e-27
Citrullus lanatus CG_Chr05 1 CH_cla_129 2 2 0.0000887115
Cucumis melo chr07 1 CH_cme_190 2 2 0.0000667111
Corchorus olitorius AWUE01017564.1 1 CH_col_24 3 3 0.000000128001
Carica papaya supercontig_126 1 CH_cpa_227 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3966 1 CH_cqu_374 2 2 0.000142146
Durio zibethinus NW_019168159.1 1 CH_dzi_332 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_19 5 5 3.0411e-17
Erythranthe guttata scaffold_1 1 CH_egut_370 2 2 0.000218444
Fragaria x ananassa Fvb2-4 1 CH_fan_476 2 2 0.000277554
Fragaria x ananassa Fvb2-3 1 CH_fan_477 2 2 0.000277554
Fragaria vesca Fvb2 1 CH_fve_275 2 2 0.0000589102
Glycine max Gm14 1 CH_gma_612 2 2 0.00079707
Glycine max Gm17 1 CH_gma_613 2 2 0.00079707
Gossypium raimondii Chr09 1 CH_gra_361 2 2 0.000321664
Hydrangea macrophylla Hma1.2p1_0196F.1 1 CH_hma_10 5 9 0.000000000000863366
Lupinus albus Lalb_Chr08 1 CH_lal_372 2 2 0.000524824
Lotus japonicus chr5 1 CH_lja_58 4 6 0.0000000000822683
Lonicera japonica GWHAAZE00000007 1 CH_lonja_149 4 22 0.00000000471138
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_19 6 7 5.6523e-20
Magnolia biondii Chr05 1 CH_mbi_144 3 3 0.0000000353808
Malus domestica Chr08 1 CH_mdo_19 6 9 4.14995e-18
Marchantia polymorpha scaffold_10 1 CH_mpo_10 5 5 0.000000000000281286
Punica granatum NC_045127.1 1 CH_pgr_290 2 2 0.000225107
Physcomitrium patens Chr21 1 CH_ppa_268 2 3 0.000551426
Prunus persica Pp01 1 CH_ppe_153 3 3 0.00000000834721
Pisum sativum chr5LG3 1 CH_psa_124 3 3 0.000000228572
Pisum sativum chr6LG2 1 CH_psa_78 4 12 0.0000000147427
Papaver somniferum NW_020628818.1 1 CH_pso_192 4 10 0.0000000220097
Papaver somniferum NC_039366.1 1 CH_pso_368 3 6 0.0000124137
Phaseolus vulgaris Chr01 1 CH_pvu_364 2 2 0.000220418
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_186 3 3 0.00000000238391
Salvia bowleyana GWHASIU00000008 1 CH_sbo_287 2 2 0.000045498
Salix brachista GWHAAZH00000007 1 CH_sbr_93 3 3 0.0000000238253
Sechium edule LG05 1 CH_sed_262 2 2 0.000214026
Sequoiadendron giganteum chr10 1 CH_sgi_521 4 6 0.000000123445
Solanum tuberosum ST4.03ch08 1 CH_stu_554 2 5 0.000512413
Trochodendron aralioides group9 1 CH_tar_525 2 2 0.000600366
Trochodendron aralioides group5 1 CH_tar_526 2 2 0.000600366
Theobroma cacao Chromosome_9 1 CH_tca_115 3 3 0.00000000804614
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_375 2 2 0.000454184
Tripterygium wilfordii NC_052240.1 1 CH_twi_314 2 2 0.00083626
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_331 2 2 0.000278772
Vigna mungo CM024072.1 1 CH_vmu_161 3 21 0.0000332835
Vitis vinifera chr4 1 CH_vvi_79 4 7 0.0000000000462072
Zea mays 9 1 CH_zma_82 3 5 0.000000392121
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_46 3 17 0.00000656655
Acer truncatum chr7 2 CH_acertr_90 3 3 0.000000007455
Actinidia chinensis Lachesis_group7 2 CH_ach_200 2 2 0.000325928
Arabidopsis lyrata scaffold_6 2 CH_aly_241 2 2 0.0000660044
Aquilegia oxysepala CHR07 2 CH_aox_32 4 6 0.000000000348153
Arabidopsis thaliana Chr5 2 CH_ath_226 2 2 0.0000286492
Amborella trichopoda AmTr_v1.0_scaffold00146 2 CH_atr_23 5 5 2.98771e-16
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_189 2 2 0.0000827917
Capsicum annuum PGAv.1.6.scaffold338 2 CH_can_285 2 2 0.0000826105
Cicer arietinum L. Ca_LG5_v3 2 CH_car_167 2 2 0.0000778301
Corylus avellana 7 2 CH_cav_364 2 2 0.000230008
Chara braunii BFEA01000721 2 CH_cbr_4 5 6 0.000000000000303523
Chara braunii BFEA01000698 2 CH_cbr_9 4 4 0.000000000234456
Citrus clementina scaffold_1 2 CH_ccl_376 2 3 0.000246083
Carpinus fangiana Cfa07 2 CH_cfa_106 3 4 0.000000137654
Cardamine hirsuta Chr6 2 CH_chi_251 2 2 0.0000691204
Carya illinoinensis Chr15 2 CH_cil_16 8 8 1.10788e-27
Citrullus lanatus CG_Chr05 2 CH_cla_129 2 2 0.0000887115
Cucumis melo chr07 2 CH_cme_190 2 2 0.0000667111
Corchorus olitorius AWUE01017564.1 2 CH_col_24 3 3 0.000000128001
Carica papaya supercontig_126 2 CH_cpa_227 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3966 2 CH_cqu_374 2 2 0.000142146
Durio zibethinus NW_019168159.1 2 CH_dzi_332 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_19 5 5 3.0411e-17
Eucalyptus grandis Chr03 2 CH_egr_529 3 9 0.00000172595
Erythranthe guttata scaffold_1 2 CH_egut_370 2 2 0.000218444
Fragaria x ananassa Fvb2-4 2 CH_fan_476 2 2 0.000277554
Fragaria x ananassa Fvb2-3 2 CH_fan_477 2 2 0.000277554
Fragaria vesca Fvb2 2 CH_fve_275 2 2 0.0000589102
Gossypium hirsutum A05 2 CH_ghi_839 2 2 0.000747644
Gossypium hirsutum D05 2 CH_ghi_840 2 2 0.000747644
Glycine max Gm14 2 CH_gma_612 2 2 0.00079707
Glycine max Gm17 2 CH_gma_613 2 2 0.00079707
Gossypium raimondii Chr09 2 CH_gra_361 2 2 0.000321664
Hydrangea macrophylla Hma1.2p1_0196F.1 2 CH_hma_10 5 9 0.000000000000863366
Lupinus albus Lalb_Chr08 2 CH_lal_372 2 2 0.000524824
Lotus japonicus chr5 2 CH_lja_58 4 6 0.0000000000822683
Lonicera japonica GWHAAZE00000007 2 CH_lonja_149 4 22 0.00000000471138
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_19 6 7 5.6523e-20
Magnolia biondii Chr05 2 CH_mbi_144 3 3 0.0000000353808
Malus domestica Chr08 2 CH_mdo_19 6 9 4.14995e-18
Marchantia polymorpha scaffold_10 2 CH_mpo_10 5 5 0.000000000000281286
Punica granatum NC_045127.1 2 CH_pgr_290 2 2 0.000225107
Physcomitrium patens Chr21 2 CH_ppa_268 2 3 0.000551426
Prunus persica Pp01 2 CH_ppe_153 3 3 0.00000000834721
Pisum sativum chr5LG3 2 CH_psa_124 3 3 0.000000228572
Pisum sativum chr6LG2 2 CH_psa_78 4 12 0.0000000147427
Papaver somniferum NW_020628818.1 2 CH_pso_192 4 10 0.0000000220097
Papaver somniferum NC_039366.1 2 CH_pso_368 3 6 0.0000124137
Phaseolus vulgaris Chr01 2 CH_pvu_364 2 2 0.000220418
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_186 3 3 0.00000000238391
Salvia bowleyana GWHASIU00000008 2 CH_sbo_287 2 2 0.000045498
Salix brachista GWHAAZH00000007 2 CH_sbr_93 3 3 0.0000000238253
Sechium edule LG05 2 CH_sed_262 2 2 0.000214026
Sequoiadendron giganteum chr10 2 CH_sgi_521 4 6 0.000000123445
Solanum tuberosum ST4.03ch08 2 CH_stu_554 2 5 0.000512413
Trochodendron aralioides group9 2 CH_tar_525 2 2 0.000600366
Trochodendron aralioides group5 2 CH_tar_526 2 2 0.000600366
Theobroma cacao Chromosome_9 2 CH_tca_115 3 3 0.00000000804614
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_375 2 2 0.000454184
Tripterygium wilfordii NC_052240.1 2 CH_twi_314 2 2 0.00083626
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_331 2 2 0.000278772
Vigna mungo CM024072.1 2 CH_vmu_161 3 21 0.0000332835
Vitis vinifera chr4 2 CH_vvi_79 4 7 0.0000000000462072
Zea mays 9 2 CH_zma_82 3 5 0.000000392121

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001