Functional clusters

Information

  • Type MapMan
  • Description Protein modification.phosphorylation.TKL protein kinase superfamily.LRR-VIII protein kinase families.protein kinase (LRR-VIII-1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 1 CH_aag_61 3 17 0.0000262551
Acer truncatum chr6 1 CH_acertr_154 5 77 0.000000456208
Actinidia chinensis Lachesis_group21 1 CH_ach_261 2 2 0.000814819
Arabidopsis lyrata scaffold_8 1 CH_aly_166 3 4 0.00000146363
Avicennia marina ScioBoG_19743_HRSCAF_19834 1 CH_ama_33 3 3 0.00000133821
Aquilegia oxysepala CHR04 1 CH_aox_280 2 2 0.000481193
Aquilegia oxysepala CHR02 1 CH_aox_281 2 2 0.000481193
Arabidopsis thaliana Chr5 1 CH_ath_55 4 6 0.000000000133314
Amborella trichopoda AmTr_v1.0_scaffold00077 1 CH_atr_88 3 3 0.0000000946662
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_64 4 6 0.00000000536091
Camellia sinensis var. sinensis Chr4 1 CH_camsi_515 4 59 0.0000430857
Cannabis sativa NC_044373.1 1 CH_cansat_192 3 9 0.0000303965
Cannabis sativa NC_044374.1 1 CH_cansat_255 3 12 0.000103428
Capsicum annuum PGAv.1.6.scaffold1379 1 CH_can_81 4 6 0.000000000887806
Coffea canephora chr2 1 CH_ccan_321 2 6 0.000459956
Carpinus fangiana scaffold13 1 CH_cfa_87 4 6 0.00000000967179
Cardamine hirsuta Chr8 1 CH_chi_153 3 4 0.0000010032
Carya illinoinensis Chr16 1 CH_cil_223 4 7 0.000000149458
Carya illinoinensis Chr13 1 CH_cil_36 8 13 2.89581e-19
Carya illinoinensis Chr15 1 CH_cil_69 6 7 0.00000000000000781803
Chenopodium quinoa C_Quinoa_Scaffold_1105 1 CH_cqu_213 3 3 0.00000122584
Capsella rubella scaffold_8 1 CH_cru_16 6 6 2.17285e-17
Davidia involucrata GWHABJS00000005 1 CH_din_197 3 8 0.00000735018
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_201 3 5 0.00000253646
Eucalyptus grandis Chr01 1 CH_egr_135 6 6 1.91288e-16
Eucalyptus grandis Chr07 1 CH_egr_136 6 6 1.91288e-16
Erythranthe guttata scaffold_2 1 CH_egut_172 4 12 0.000000188847
Fragaria x ananassa Fvb6-1 1 CH_fan_378 4 64 0.000087586
Fragaria vesca Fvb6 1 CH_fve_159 5 65 0.000000341119
Fragaria vesca Fvb3 1 CH_fve_235 3 6 0.0000171684
Hydrangea macrophylla Hma1.2p1_0157F.1 1 CH_hma_206 2 2 0.000111086
Lonicera japonica GWHAAZE00000009 1 CH_lonja_84 5 8 0.000000000000680567
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_62 5 8 0.00000000000135404
Magnolia biondii Chr03 1 CH_mbi_244 3 6 0.00000396128
Magnolia biondii Chr15 1 CH_mbi_94 4 8 0.00000000168334
Malus domestica Chr04 1 CH_mdo_184 4 14 0.0000000343531
Medicago truncatula chr8 1 CH_mtr_310 3 3 0.000000303862
Nelumbo nucifera chr5 1 CH_nnu_25 6 19 0.0000000000000201808
Petunia axillaris Peaxi162Scf00374 1 CH_pax_105 3 3 0.000000415808
Petunia axillaris Peaxi162Scf00194 1 CH_pax_137 3 5 0.00000415669
Punica granatum NC_045127.1 1 CH_pgr_76 5 29 0.0000000035445
Prunus persica Pp06 1 CH_ppe_52 8 48 2.5091e-16
Pisum sativum chr5LG3 1 CH_psa_398 2 2 0.000782452
Populus trichocarpa Chr04 1 CH_ptr_13 11 14 4.16723e-30
Populus trichocarpa Chr16 1 CH_ptr_282 3 4 0.0000308568
Phaseolus vulgaris Chr08 1 CH_pvu_163 4 13 0.000000420141
Quercus lobata 1 1 CH_qlo_129 7 17 0.0000000000000100018
Quercus lobata CM012294 1 CH_qlo_173 7 28 0.00000000000060619
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_543 3 12 0.000115221
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_80 6 19 0.0000000000000567158
Rhododendron simsii chr11 1 CH_rsi_188 4 15 0.000000138419
Salix brachista GWHAAZH00000001 1 CH_sbr_9 9 18 4.15901e-22
Sequoiadendron giganteum chr5 1 CH_sgi_1386 3 11 0.000779001
Sequoiadendron giganteum chr1 1 CH_sgi_37 10 13 1.10482e-27
Sequoiadendron giganteum chr1 1 CH_sgi_590 4 12 0.00000102466
Solanum lycopersicum SL4.0ch01 1 CH_sly_201 3 4 0.00000115739
Selaginella moellendorffii scaffold_2 1 CH_smo_172 2 2 0.000933707
Solanum pennellii Spenn-ch01 1 CH_spe_188 3 5 0.00000166153
Solanum tuberosum ST4.03ch01 1 CH_stu_561 2 2 0.000512453
Theobroma cacao Chromosome_6 1 CH_tca_38 5 5 0.0000000000000271949
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_156 3 4 0.00000435105
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_157 3 4 0.00000435105
Zea mays 3 1 CH_zma_176 3 13 0.000134378
Zea mays 6 1 CH_zma_290 3 23 0.000830782
Anthoceros agrestis Sc2ySwM_368 2 CH_aag_61 3 17 0.0000262551
Acer truncatum chr6 2 CH_acertr_154 5 77 0.000000456208
Actinidia chinensis Lachesis_group21 2 CH_ach_261 2 2 0.000814819
Arabidopsis lyrata scaffold_8 2 CH_aly_166 3 4 0.00000146363
Avicennia marina ScioBoG_19743_HRSCAF_19834 2 CH_ama_33 3 3 0.00000133821
Aquilegia oxysepala CHR04 2 CH_aox_280 2 2 0.000481193
Aquilegia oxysepala CHR02 2 CH_aox_281 2 2 0.000481193
Arabidopsis thaliana Chr5 2 CH_ath_55 4 6 0.000000000133314
Amborella trichopoda AmTr_v1.0_scaffold00077 2 CH_atr_88 3 3 0.0000000946662
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_64 4 6 0.00000000536091
Camellia sinensis var. sinensis Chr4 2 CH_camsi_515 4 59 0.0000430857
Cannabis sativa NC_044373.1 2 CH_cansat_192 3 9 0.0000303965
Cannabis sativa NC_044374.1 2 CH_cansat_255 3 12 0.000103428
Capsicum annuum PGAv.1.6.scaffold1379 2 CH_can_81 4 6 0.000000000887806
Coffea canephora chr2 2 CH_ccan_321 2 6 0.000459956
Carpinus fangiana scaffold13 2 CH_cfa_87 4 6 0.00000000967179
Cardamine hirsuta Chr8 2 CH_chi_153 3 4 0.0000010032
Carya illinoinensis Chr16 2 CH_cil_223 4 7 0.000000149458
Carya illinoinensis Chr13 2 CH_cil_36 8 13 2.89581e-19
Carya illinoinensis Chr15 2 CH_cil_69 6 7 0.00000000000000781803
Chenopodium quinoa C_Quinoa_Scaffold_1105 2 CH_cqu_213 3 3 0.00000122584
Capsella rubella scaffold_8 2 CH_cru_16 6 6 2.17285e-17
Davidia involucrata GWHABJS00000005 2 CH_din_197 3 8 0.00000735018
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_201 3 5 0.00000253646
Eucalyptus grandis Chr01 2 CH_egr_135 6 6 1.91288e-16
Eucalyptus grandis Chr07 2 CH_egr_136 6 6 1.91288e-16
Erythranthe guttata scaffold_2 2 CH_egut_172 4 12 0.000000188847
Fragaria x ananassa Fvb6-1 2 CH_fan_378 4 64 0.000087586
Fragaria vesca Fvb6 2 CH_fve_159 5 65 0.000000341119
Fragaria vesca Fvb3 2 CH_fve_235 3 6 0.0000171684
Hydrangea macrophylla Hma1.2p1_0157F.1 2 CH_hma_206 2 2 0.000111086
Lonicera japonica GWHAAZE00000009 2 CH_lonja_84 5 8 0.000000000000680567
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_62 5 8 0.00000000000135404
Magnolia biondii Chr03 2 CH_mbi_244 3 6 0.00000396128
Magnolia biondii Chr15 2 CH_mbi_94 4 8 0.00000000168334
Malus domestica Chr04 2 CH_mdo_184 4 14 0.0000000343531
Nelumbo nucifera chr5 2 CH_nnu_25 6 19 0.0000000000000201808
Petunia axillaris Peaxi162Scf00374 2 CH_pax_105 3 3 0.000000415808
Petunia axillaris Peaxi162Scf00194 2 CH_pax_137 3 5 0.00000415669
Punica granatum NC_045127.1 2 CH_pgr_76 5 29 0.0000000035445
Prunus persica Pp06 2 CH_ppe_52 8 48 2.5091e-16
Pisum sativum chr5LG3 2 CH_psa_398 2 2 0.000782452
Populus trichocarpa Chr04 2 CH_ptr_13 11 14 4.16723e-30
Populus trichocarpa Chr16 2 CH_ptr_282 3 4 0.0000308568
Phaseolus vulgaris Chr08 2 CH_pvu_163 4 13 0.000000420141
Quercus lobata 1 2 CH_qlo_129 7 17 0.0000000000000100018
Quercus lobata CM012294 2 CH_qlo_173 7 28 0.00000000000060619
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_543 3 12 0.000115221
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_80 6 19 0.0000000000000567158
Rhododendron simsii chr11 2 CH_rsi_188 4 15 0.000000138419
Salix brachista GWHAAZH00000001 2 CH_sbr_9 9 18 4.15901e-22
Sequoiadendron giganteum chr5 2 CH_sgi_1386 3 11 0.000779001
Sequoiadendron giganteum chr1 2 CH_sgi_37 10 13 1.10482e-27
Sequoiadendron giganteum chr1 2 CH_sgi_590 4 12 0.00000102466
Solanum lycopersicum SL4.0ch01 2 CH_sly_201 3 4 0.00000115739
Selaginella moellendorffii scaffold_2 2 CH_smo_172 2 2 0.000933707
Solanum pennellii Spenn-ch01 2 CH_spe_188 3 5 0.00000166153
Solanum tuberosum ST4.03ch01 2 CH_stu_561 2 2 0.000512453
Theobroma cacao Chromosome_6 2 CH_tca_38 5 5 0.0000000000000271949
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_156 3 4 0.00000435105
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_157 3 4 0.00000435105
Zea mays 3 2 CH_zma_176 3 13 0.000134378
Zea mays 6 2 CH_zma_290 3 23 0.000830782

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001