Functional clusters
Information
- Type MapMan
- Description Protein modification.protein folding.protein folding catalyst (FKBP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group9 | 1 | CH_ach_70 | 3 | 3 | 0.0000145006 |
| Avicennia marina | ScioBoG_22153_HRSCAF_22259 | 1 | CH_ama_48 | 3 | 4 | 0.0000686497 |
| Brassica carinata | ChrB08 | 1 | CH_bca_1076 | 3 | 7 | 0.000738906 |
| Brassica carinata | ChrC06 | 1 | CH_bca_519 | 3 | 3 | 0.0000211498 |
| Brassica carinata | ChrB07 | 1 | CH_bca_661 | 3 | 4 | 0.0000845609 |
| Brassica carinata | ChrC01 | 1 | CH_bca_954 | 4 | 33 | 0.000501843 |
| Brassica oleracea | C3 | 1 | CH_bol_260 | 4 | 31 | 0.0000894773 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 1 | CH_bvu_201 | 3 | 4 | 0.0000831864 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_316 | 4 | 42 | 0.000286552 |
| Capsicum annuum | PGAv.1.6.scaffold128 | 1 | CH_can_120 | 4 | 6 | 0.0000000603309 |
| Helianthus annuus | HanXRQChr08 | 1 | CH_han_358 | 3 | 3 | 0.00000818478 |
| Medicago truncatula | chr8 | 1 | CH_mtr_258 | 4 | 5 | 0.0000000373956 |
| Medicago truncatula | chr8 | 1 | CH_mtr_293 | 6 | 61 | 0.000000129133 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_336 | 3 | 8 | 0.000379993 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_85 | 4 | 5 | 0.0000000188465 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_350 | 4 | 14 | 0.00000723997 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_69 | 8 | 44 | 0.0000000000000914159 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_522 | 3 | 5 | 0.0000696764 |
| Schrenkiella parvula | ch3-2 | 1 | CH_spa_143 | 3 | 3 | 0.0000164684 |
| Actinidia chinensis | Lachesis_group9 | 2 | CH_ach_70 | 3 | 3 | 0.0000145006 |
| Avicennia marina | ScioBoG_22153_HRSCAF_22259 | 2 | CH_ama_48 | 3 | 4 | 0.0000686497 |
| Brassica carinata | ChrB08 | 2 | CH_bca_1076 | 3 | 7 | 0.000738906 |
| Brassica carinata | ChrC06 | 2 | CH_bca_519 | 3 | 3 | 0.0000211498 |
| Brassica carinata | ChrB07 | 2 | CH_bca_661 | 3 | 4 | 0.0000845609 |
| Brassica carinata | ChrC01 | 2 | CH_bca_954 | 4 | 33 | 0.000501843 |
| Brassica oleracea | C3 | 2 | CH_bol_260 | 4 | 31 | 0.0000894773 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 2 | CH_bvu_201 | 3 | 4 | 0.0000831864 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_316 | 4 | 42 | 0.000286552 |
| Capsicum annuum | PGAv.1.6.scaffold128 | 2 | CH_can_120 | 4 | 6 | 0.0000000603309 |
| Helianthus annuus | HanXRQChr08 | 2 | CH_han_358 | 3 | 3 | 0.00000818478 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_336 | 3 | 8 | 0.000379993 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_85 | 4 | 5 | 0.0000000188465 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_350 | 4 | 14 | 0.00000723997 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_69 | 8 | 44 | 0.0000000000000914159 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_522 | 3 | 5 | 0.0000696764 |
| Schrenkiella parvula | ch3-2 | 2 | CH_spa_143 | 3 | 3 | 0.0000164684 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |