Functional clusters

Information

  • Type MapMan
  • Description Protein modification.glycosylation.C-linked glycosylation.C-glucosyltransferase (CGT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_328 2 2 0.000070497
Aquilegia oxysepala CHR03 1 CH_aox_171 2 2 0.0000801989
Camellia sinensis var. sinensis Chr1 1 CH_camsi_737 2 2 0.000275128
Camellia sinensis var. sinensis Chr2 1 CH_camsi_738 2 2 0.000275128
Carpinus fangiana Cfa03 1 CH_cfa_282 2 3 0.000227195
Carya illinoinensis Chr06 1 CH_cil_361 2 2 0.0000619828
Corchorus olitorius AWUE01019716.1 1 CH_col_83 2 2 0.000292099
Davidia involucrata GWHABJS00000014 1 CH_din_354 2 2 0.000150038
Eucalyptus grandis Chr05 1 CH_egr_99 6 6 4.32778e-19
Erythranthe guttata scaffold_8 1 CH_egut_123 3 3 0.00000000795325
Fragaria x ananassa Fvb6-1 1 CH_fan_223 3 13 0.00000225914
Fragaria x ananassa Fvb6-2 1 CH_fan_475 2 2 0.000277554
Fragaria vesca Fvb6 1 CH_fve_115 3 4 0.0000000208224
Lonicera japonica GWHAAZE00000004 1 CH_lonja_521 2 4 0.000359303
Oryza sativa ssp. japonica chr06 1 CH_osa_87 3 5 0.0000000418359
Punica granatum NC_045133.1 1 CH_pgr_38 4 4 0.00000000000126757
Prunus persica Pp03 1 CH_ppe_152 3 3 0.00000000834721
Phaseolus vulgaris Chr04 1 CH_pvu_67 4 7 0.0000000000416454
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_280 3 6 0.000000190692
Salvia bowleyana GWHASIU00000001 1 CH_sbo_343 2 2 0.000136494
Simmondsia chinensis GWHAASQ00000011 1 CH_sci_166 2 2 0.0000851426
Sequoiadendron giganteum chr7 1 CH_sgi_1277 2 3 0.000438418
Solanum pennellii Spenn-ch02 1 CH_spe_471 2 5 0.000444761
Theobroma cacao Chromosome_2 1 CH_tca_154 3 4 0.00000012873
Tripterygium wilfordii NC_052253.1 1 CH_twi_181 2 2 0.0000557507
Utricularia gibba unitig_744 1 CH_ugi_197 2 3 0.000220369
Vigna mungo CM024077.1 1 CH_vmu_103 3 5 0.000000250479
Zea mays 6 1 CH_zma_76 3 5 0.000000156858
Acer truncatum chr11 2 CH_acertr_328 2 2 0.000070497
Aquilegia oxysepala CHR03 2 CH_aox_171 2 2 0.0000801989
Camellia sinensis var. sinensis Chr1 2 CH_camsi_737 2 2 0.000275128
Camellia sinensis var. sinensis Chr2 2 CH_camsi_738 2 2 0.000275128
Carpinus fangiana Cfa03 2 CH_cfa_282 2 3 0.000227195
Carya illinoinensis Chr06 2 CH_cil_361 2 2 0.0000619828
Corchorus olitorius AWUE01019716.1 2 CH_col_83 2 2 0.000292099
Davidia involucrata GWHABJS00000014 2 CH_din_354 2 2 0.000150038
Eucalyptus grandis Chr05 2 CH_egr_99 6 6 4.32778e-19
Erythranthe guttata scaffold_8 2 CH_egut_123 3 3 0.00000000795325
Fragaria x ananassa Fvb6-1 2 CH_fan_223 3 13 0.00000225914
Fragaria x ananassa Fvb6-2 2 CH_fan_475 2 2 0.000277554
Fragaria vesca Fvb6 2 CH_fve_115 3 4 0.0000000208224
Lonicera japonica GWHAAZE00000004 2 CH_lonja_521 2 4 0.000359303
Oryza sativa ssp. japonica chr06 2 CH_osa_87 3 5 0.0000000418359
Punica granatum NC_045133.1 2 CH_pgr_38 4 4 0.00000000000126757
Prunus persica Pp03 2 CH_ppe_152 3 3 0.00000000834721
Phaseolus vulgaris Chr04 2 CH_pvu_67 4 7 0.0000000000416454
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_280 3 6 0.000000190692
Salvia bowleyana GWHASIU00000001 2 CH_sbo_343 2 2 0.000136494
Simmondsia chinensis GWHAASQ00000011 2 CH_sci_166 2 2 0.0000851426
Sequoiadendron giganteum chr7 2 CH_sgi_1277 2 3 0.000438418
Solanum pennellii Spenn-ch02 2 CH_spe_471 2 5 0.000444761
Theobroma cacao Chromosome_2 2 CH_tca_154 3 4 0.00000012873
Tripterygium wilfordii NC_052253.1 2 CH_twi_181 2 2 0.0000557507
Utricularia gibba unitig_744 2 CH_ugi_197 2 3 0.000220369
Vigna mungo CM024077.1 2 CH_vmu_103 3 5 0.000000250479
Zea mays 6 2 CH_zma_76 3 5 0.000000156858

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001