Functional clusters

Information

  • Type MapMan
  • Description Protein modification.glycosylation.N-linked glycosylation.dolichol-phosphate biosynthesis.polyprenol reductase (PPRD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_267 3 5 0.00000047051
Brassica carinata ChrC04 1 CH_bca_919 2 2 0.000448905
Brassica oleracea C3 1 CH_bol_303 2 2 0.000196117
Fragaria vesca Fvb2 1 CH_fve_262 2 2 0.0000589102
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_349 3 44 0.0000524326
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_553 2 3 0.000119593
Schrenkiella parvula ch3-5 1 CH_spa_65 3 3 0.00000000929892
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_267 3 5 0.00000047051
Brassica carinata ChrC04 2 CH_bca_919 2 2 0.000448905
Brassica oleracea C3 2 CH_bol_303 2 2 0.000196117
Fragaria vesca Fvb2 2 CH_fve_262 2 2 0.0000589102
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_349 3 44 0.0000524326
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_553 2 3 0.000119593
Schrenkiella parvula ch3-5 2 CH_spa_65 3 3 0.00000000929892

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001